Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03089 ATGATATTCCAGGTTTATTTTCTCGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCGATGTTCTTAGCCCAAAATCACAATCTAAAAATGATGAGGTGAATAATGGAATTGCTGAAAAGGATGTCAAGCGAGTGATATTAGAGAAAGATGTGGAAAGAATATCAGATGTTGATATTGATCCGGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAACTTCAAGACAACAGAAGAGGGTTTGAGGGAACATTTCAGTAAACACATGAAAGCGGGACGGGTTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTGTGGCATTTGGATTTGTTGAGTTTGACTCTACAGAGACTGCTACAAGTGTTTGCAACGATTTACAGGGGGCTGTTTTGGACAGTTTTGCTCATATTTTACAACCTTGTCATGTCAAGAATGTTGGTAAAGTACAAAAGAAAGTTGAGAAAGGCAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAGTTATTTAGCCCATTTGGCCAGATTAAAAAATTAAAATTGCCAATGAAGTTTGGAAATCTTAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCACTCTCAAGCACCCACTTGTATGGCAGACATCTGGTGATTGAGAGAGCAAACGAAGGTGAGAGTTTGAAGGAACTGCGAGCTAGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACTAACTTATCCAAGAAAAGGAAGGCCATCAGTGACGTGCAAATTATTCTAAATGACGATCTACTCAGAGCCGTTCCTAGAGATTTACGGGTCTTATGCATAATATCATAA 963 0.3967 MIFQVYFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDVLSPKSQSKNDEVNNGIAEKDVKRVILEKDVERISDVDIDPDRIEARSLFVKNLNFKTTEEGLREHFSKHMKAGRVLSVKVKKHLKNGKNVSVAFGFVEFDSTETATSVCNDLQGAVLDSFAHILQPCHVKNVGKVQKKVEKGKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNLRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERANEGESLKELRARTAAQFNEHSGFQDTNLSKKRKAISDVQIILNDDLLRAVPRDLRVLCIIS 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03089 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 261 IPR000504 GO:0003723
Mepo3g03089 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 158 IPR000504 GO:0003723
Mepo3g03089 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Mepo3g03089 320 PANTHER RNA BINDING PROTEIN 112 267 - -
Mepo3g03089 320 Gene3D - 82 175 IPR012677 -
Mepo3g03089 320 FunFam Multiple RNA-binding domain-containing protein 1 179 284 - -
Mepo3g03089 320 SUPERFAMILY RNA-binding domain, RBD 181 268 IPR035979 GO:0003676
Mepo3g03089 320 CDD RRM6_RBM19_RRM5_MRD1 185 259 - -
Mepo3g03089 320 SUPERFAMILY RNA-binding domain, RBD 72 160 IPR035979 GO:0003676
Mepo3g03089 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 158 IPR000504 GO:0003723
Mepo3g03089 320 Gene3D - 3 62 IPR012677 -
Mepo3g03089 320 Gene3D - 176 285 IPR012677 -
Mepo3g03089 320 SMART rrm1_1 86 166 IPR000504 GO:0003723
Mepo3g03089 320 SMART rrm1_1 186 257 IPR000504 GO:0003723
Mepo3g03089 320 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 66 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03089 Mepo-Chr3 41057717 41061924 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03089 78 296 Eukaryotic Initiation Factors Gene Family AT4G34110 27.155 3.61e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03089 K14787 - cave:132177808 426.787