Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo3g03089 | ATGATATTCCAGGTTTATTTTCTCGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAGGATGCTCCCTTATACTTGGAGTGGGCTCCTTCCGATGTTCTTAGCCCAAAATCACAATCTAAAAATGATGAGGTGAATAATGGAATTGCTGAAAAGGATGTCAAGCGAGTGATATTAGAGAAAGATGTGGAAAGAATATCAGATGTTGATATTGATCCGGACAGAATAGAGGCTCGGTCCCTGTTTGTCAAGAACCTAAACTTCAAGACAACAGAAGAGGGTTTGAGGGAACATTTCAGTAAACACATGAAAGCGGGACGGGTTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTGTGGCATTTGGATTTGTTGAGTTTGACTCTACAGAGACTGCTACAAGTGTTTGCAACGATTTACAGGGGGCTGTTTTGGACAGTTTTGCTCATATTTTACAACCTTGTCATGTCAAGAATGTTGGTAAAGTACAAAAGAAAGTTGAGAAAGGCAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACAAAGAAGGATCTGAGACAGTTATTTAGCCCATTTGGCCAGATTAAAAAATTAAAATTGCCAATGAAGTTTGGAAATCTTAGAGGCTTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCTCTTACAGCACTCTCAAGCACCCACTTGTATGGCAGACATCTGGTGATTGAGAGAGCAAACGAAGGTGAGAGTTTGAAGGAACTGCGAGCTAGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACTAACTTATCCAAGAAAAGGAAGGCCATCAGTGACGTGCAAATTATTCTAAATGACGATCTACTCAGAGCCGTTCCTAGAGATTTACGGGTCTTATGCATAATATCATAA | 963 | 0.3967 | MIFQVYFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDVLSPKSQSKNDEVNNGIAEKDVKRVILEKDVERISDVDIDPDRIEARSLFVKNLNFKTTEEGLREHFSKHMKAGRVLSVKVKKHLKNGKNVSVAFGFVEFDSTETATSVCNDLQGAVLDSFAHILQPCHVKNVGKVQKKVEKGKSSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLKLPMKFGNLRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERANEGESLKELRARTAAQFNEHSGFQDTNLSKKRKAISDVQIILNDDLLRAVPRDLRVLCIIS | 320 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo3g03089 | 320 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 185 | 261 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 87 | 158 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 187 | 254 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | PANTHER | RNA BINDING PROTEIN | 112 | 267 | - | - | |
Mepo3g03089 | 320 | Gene3D | - | 82 | 175 | IPR012677 | - | |
Mepo3g03089 | 320 | FunFam | Multiple RNA-binding domain-containing protein 1 | 179 | 284 | - | - | |
Mepo3g03089 | 320 | SUPERFAMILY | RNA-binding domain, RBD | 181 | 268 | IPR035979 | GO:0003676 | |
Mepo3g03089 | 320 | CDD | RRM6_RBM19_RRM5_MRD1 | 185 | 259 | - | - | |
Mepo3g03089 | 320 | SUPERFAMILY | RNA-binding domain, RBD | 72 | 160 | IPR035979 | GO:0003676 | |
Mepo3g03089 | 320 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 85 | 158 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | Gene3D | - | 3 | 62 | IPR012677 | - | |
Mepo3g03089 | 320 | Gene3D | - | 176 | 285 | IPR012677 | - | |
Mepo3g03089 | 320 | SMART | rrm1_1 | 86 | 166 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | SMART | rrm1_1 | 186 | 257 | IPR000504 | GO:0003723 | |
Mepo3g03089 | 320 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 66 | 177 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo3g03089 | Mepo-Chr3 | 41057717 | 41061924 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo3g03089 | 78 | 296 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 27.155 | 3.61e-09 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo3g03089 | K14787 | - | cave:132177808 | 426.787 |