Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03086 ATGTCGAATGATGTTGTGAAAGTGAAGAGAGAAACGATTGCAGCATGCATGACTTGTCCACTATGTAACAATTTGTTCAAACAACCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGACAAATTTACTGATGAGGATTTGGAATGCTGTCCAGTATGTAACATTGATTTGGGTTGTGTTCCACTTGAGAAACTAAGGCCTGACCACACTAAGCAAGATGTAAGGGCCAAAATCTTCCCCTTAAAGGGAAGAAAGATGAAAGCACCTGAACCTGAAGTTGTCTCCGCCTCAGAACCATTGCCAGCTAAAAGAAAGGAGAGATCTCTTTCGTCTTTGGTGGTCAACACACCAAGGGTATCTGTGCAAACAACCATGACAGGAAGAAGAACGAAACCTACCAGAAAGGCTAGCAGTCTGCGGTCCTCTAGTTTTTCCATTGAAAAATCAATTAAAAAAGAGGCAGAACTACTGGATGACCGTCCCGAGAGTTCAAGCTCACCTGAAGCTTCAAATAAGCTGCGTCAGAACAACGGACAGAGTGAGGGTAGTCAATCCGCACCAAATAGAGTAACAGAGAACGATTCCAAAACATGTGACGCAAAGATGGATCTTTGGAAACCGTTGAATTGTTTAGTAGAGGTCGCAAGCAGGACTAAATCTTTGAAGTCTAATAATATACAAGGGTCTGATGCTAAACCAGAACCTGCTCAAGCAAATGAGAGTGGCTCTCAAGTGCAGAAAATCAAAAATAAGGAAAAGAAACGCAAGGCAAAAGTTGAGGATGAAAGTATTAGCCCATTTCCTGTTTCATCAGATACAGCAAAACCCAATAAATTGCGCAGAGTACGCAGGAAAAAGGAACCTTTTGGAGAATCAGGCATATCACCCCAAGCTGTGGTTGATTCTACTGGCAGTAAACTCTTTAAGAGGGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAATCAAGAAGGAGACACACCCTTGCCACAAATTCCTGCAAGCTATGTGAGAATAAAGGATGGAAGCGTACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTCGATCTGACCAGTGAAACAGAGATTGAGATTATATGTATGGGACAACCAGTTCTCCCTACATTGACACTACATAATTTGGTTGAGCTGTGGCTTGATTCAACAGCGTCCACATCACATCGAATTCCGGCTATTATTGGATCCTCAGCAAAGGATTTTGTCATGGTCCTCGCTTATGCCCGGAAATCTCCACACCCTTAA 1287 0.4204 MSNDVVKVKRETIAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCNIDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKMKAPEPEVVSASEPLPAKRKERSLSSLVVNTPRVSVQTTMTGRRTKPTRKASSLRSSSFSIEKSIKKEAELLDDRPESSSSPEASNKLRQNNGQSEGSQSAPNRVTENDSKTCDAKMDLWKPLNCLVEVASRTKSLKSNNIQGSDAKPEPAQANESGSQVQKIKNKEKKRKAKVEDESISPFPVSSDTAKPNKLRRVRRKKEPFGESGISPQAVVDSTGSKLFKRGPIWFSLVASENQEGDTPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEIEIICMGQPVLPTLTLHNLVELWLDSTASTSHRIPAIIGSSAKDFVMVLAYARKSPHP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03086 428 MobiDBLite consensus disorder prediction 92 201 - -
Mepo3g03086 428 SUPERFAMILY RING/U-box 14 78 - -
Mepo3g03086 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Mepo3g03086 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Mepo3g03086 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 425 IPR044807 GO:0004842
Mepo3g03086 428 MobiDBLite consensus disorder prediction 229 302 - -
Mepo3g03086 428 MobiDBLite consensus disorder prediction 229 251 - -
Mepo3g03086 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Mepo3g03086 428 MobiDBLite consensus disorder prediction 152 168 - -
Mepo3g03086 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 114 IPR013083 -
Mepo3g03086 428 Gene3D - 302 397 - -
Mepo3g03086 428 CDD RING-HC_PCGF 17 60 - -
Mepo3g03086 428 MobiDBLite consensus disorder prediction 115 151 - -
Mepo3g03086 428 MobiDBLite consensus disorder prediction 169 199 - -
Mepo3g03086 428 SMART ring_2 19 59 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03086 Mepo-Chr3 41030595 41035840 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03086 1 346 C3H Transcription Factor Family AT2G30580 50.852 5.61e-101 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03086 K16277 - gmx:100815540 637.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03086 3 41030595 41035840 Mepo3g03086 3 41030595 41035840 ECH