Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03079 ATGGAAGTTGTTAGCATGAAGAAGGAGAATATGGGATTTGAGGAAACTGAGTTGAGACTTGGAATTGGATTTCTTGGAAATAATGGATCAGCCATAGCTACTGAAGGAGTTGTAAGGAAGAGAGGATTTTCTGAGACTGAAACTGATGATGAGAAAACTACTATGGATTTGATGCTTAATCTTTCCTCTAAGGAAGCTACTGCTGAGGTAGATCCAAGTGATAAAACCACCAAGACTTTGCAAAAGGAGAAGACCCTTTTGCCTGCAGATCCTGCCAAGCCTCCTGCAAAGGCTCAAGTGGTGGGTTGGCCACCTGTCCGGTCGTACCGGAAGAACATGCTAGCAATGCAAAAGAGTGAAAGTGAGAAGAACAGCAGCTCCAATTTCAATGCAATTACATTTGTGAAAGTTAGTATGGATGGAGCTCCTTACCTCCGTAAAGTTGACTTGAAAATGTACACAAGTTACTCACAGCTTTCTGATTCCTTAGGCAAAATGTTCAGCTCCTTCACCATTGGCAACTGTGAATCTCAAGGAATGAAGGATTTCATGAATGAGAGTAAGTTGATGGATCTTTTGAACAATTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGACGTCCCATGGGAGATGTTTGTTGAATCATGCAAACGTTTGCGTATCATGAAAGGAAAGGAGGCTATTGGTATAGCACCAAGAGCCATGGAAAAATGCAAGAACAGGAGCTAG 753 0.4236 MEVVSMKKENMGFEETELRLGIGFLGNNGSAIATEGVVRKRGFSETETDDEKTTMDLMLNLSSKEATAEVDPSDKTTKTLQKEKTLLPADPAKPPAKAQVVGWPPVRSYRKNMLAMQKSESEKNSSSNFNAITFVKVSMDGAPYLRKVDLKMYTSYSQLSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNNSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGIAPRAMEKCKNRS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03079 250 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 236 IPR003311 GO:0005634|GO:0006355
Mepo3g03079 250 FunFam Auxin-responsive protein 127 242 - -
Mepo3g03079 250 ProSiteProfiles PB1 domain profile. 132 232 IPR000270 GO:0005515
Mepo3g03079 250 SUPERFAMILY CAD & PB1 domains 123 231 - -
Mepo3g03079 250 Gene3D - 106 243 - -
Mepo3g03079 250 Pfam AUX/IAA family 15 241 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03079 Mepo-Chr3 40963938 40968602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03079 136 235 B3 DNA Binding Superfamily AT3G61830 33.000 1.41e-07 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo3g03079 AUX_IAA 3.2e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03079 K14484 - gmx:100810013 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03079 3 40963938 40968602 Mepo3g03079 3 40963938 40968602 ECH