Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03078 ATGGGAAGCTATATTGAAACAGAGTTGATTATTAATCACAAGGACACAGAATTAAGATTGGGATTGCCTGGAAGTGATGATGAACAATCATGCAATGGTGGTTCTATTGTTAGAAGCAACAAGAGATCTTTTTCACCTGAAACAAGTGTTGAAGAAGAGTCCATTTCTAAGAGCAGTGGTGATTCTAATTCCACAACCACAAGTGATCATGACCAAGACACTGTCCAACCTACAAAGGTACAAGTTGTTGGGTGGCCACCAATTAGATCTTTTAGGAAGAATAGTTTACAACAAAATAAAGTGGAAGATGGAAGTGGAATGTATGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAAATAGATCTCAAAGTTTACAAGAGTTACTCAGAACTTCTTAAGGTTTTGGAAAATATGTTTAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGATACAATGGATCTGAACATGCTCCTACTTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTCCCATGGAACATGTTTATATCCTCATGCAAGAGGCTGAAGATAGTGAAAGGATCAGAAGCAAAAGGGTTGGCATGTTTATGA 609 0.381 MGSYIETELIINHKDTELRLGLPGSDDEQSCNGGSIVRSNKRSFSPETSVEEESISKSSGDSNSTTTSDHDQDTVQPTKVQVVGWPPIRSFRKNSLQQNKVEDGSGMYVKVSMAGAPYLRKIDLKVYKSYSELLKVLENMFKCTFGEYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFISSCKRLKIVKGSEAKGLACL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03078 202 MobiDBLite consensus disorder prediction 21 79 - -
Mepo3g03078 202 SUPERFAMILY CAD & PB1 domains 102 190 - -
Mepo3g03078 202 ProSiteProfiles PB1 domain profile. 106 198 IPR000270 GO:0005515
Mepo3g03078 202 FunFam Auxin-responsive protein 101 202 - -
Mepo3g03078 202 Gene3D - 100 202 - -
Mepo3g03078 202 Pfam AUX/IAA family 16 200 IPR033389 -
Mepo3g03078 202 MobiDBLite consensus disorder prediction 28 79 - -
Mepo3g03078 202 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 12 197 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03078 Mepo-Chr3 40954019 40955244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03078 94 199 B3 DNA Binding Superfamily AT2G46530 37.736 2.98e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Mepo3g03078 AUX_IAA 7.4e-56 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03078 K14484 - gmx:100792134 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03078 3 40954019 40955244 Mepo3g03078 3 40954019 40955244 ECH