Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03063 ATGAACTATCTCTACCCGGTGAAAGAAGAGTATTTGGAAATTGAGGCAACCTCGTCATCATCGACATATGAAAGAGGAAGTGATGAGGGATCAACGGTTGTTATTCCACGGCCAATGGAGGGGCTTCATGAAGTAGGACCACCACCATTTCTCACAAAGACATTTGATGTTGTGGAGGACCCCACAACAAGTCACATAGTTTCATGGAGCAGAGGTGGTGCTAGCTTTGTTGTTTGGGATCCAAATGCTTTCTCCAGAGACCTTCTTCCTAGATACTTCAAACACAACAATTTCTCAAGTTTTGTTAGACAGCTCAACACCTATGGTTTTAGAAAAATTGATCCTGATAAATGGGAGTTTGCAAATGAAGGATTTCTAAGAGGACATAAACATCTTTTAGCAAACATTAAGAGAAGGAGACAAACTTTACAACCTAGTACTTCACAACAACATTCATCACAAGGTCATTGTGTTGAAGTTGGTCGTTTTGGATTAGACGAAGAAATCGATCATTTGAGGCGCGACAAACAAGTTTTAATGATGGAACTTGTGAAGCTTAGACAGCAACAACAGAATACAAGATCCATTCTTCAAGCAATGGAGGAAAGGCTACGTGGTACAGAAATTAAGCAGCAACAAATGATGGCTTTTTTGGCTAGAGCTATGAAAAATCCAGCTTTTATTCAGCAATTACTTCAACAGAAGGAAAAGAGAAAGGAGATTGAAGATGCTATTACTAAGAAGAGGAGAAGGCCAATTGAGTATGGAGAATCAAGTAATGGTGGAGATGGAAGAAGCAATGTTAGATATGGATTTGAAGTGTCAGAGTTGGAAATGTTGGCTATGGAAATGCAGGGTCTTGGAAGAGGTGGTGGAGAACATGAGGAAGAGATTGAGGTATTTGAGACTCATGAGAAATTGAATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTTAGTGAGAAATTTGAGAGTGAATTAGATATTCTAACTTCTCAAGATGATGATGATGATGATGATGATGTCAATGTGTTGTCCAATCGCTTTGGTTACTTAGGTTCTAGTCCGAAATGA 1077 0.39 MNYLYPVKEEYLEIEATSSSSTYERGSDEGSTVVIPRPMEGLHEVGPPPFLTKTFDVVEDPTTSHIVSWSRGGASFVVWDPNAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHKHLLANIKRRRQTLQPSTSQQHSSQGHCVEVGRFGLDEEIDHLRRDKQVLMMELVKLRQQQQNTRSILQAMEERLRGTEIKQQQMMAFLARAMKNPAFIQQLLQQKEKRKEIEDAITKKRRRPIEYGESSNGGDGRSNVRYGFEVSELEMLAMEMQGLGRGGGEHEEEIEVFETHEKLNKELDEGFWEELFSEKFESELDILTSQDDDDDDDDVNVLSNRFGYLGSSPK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03063 358 FunFam Heat shock transcription factor 1 43 140 - -
Mepo3g03063 358 SMART hsfneu3 46 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo3g03063 358 SUPERFAMILY "Winged helix" DNA-binding domain 46 139 IPR036390 -
Mepo3g03063 358 ProSitePatterns HSF-type DNA-binding domain signature. 89 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo3g03063 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 36 259 IPR027725 -
Mepo3g03063 358 Coils Coil 169 203 - -
Mepo3g03063 358 PRINTS Heat shock factor (HSF) domain signature 101 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo3g03063 358 PRINTS Heat shock factor (HSF) domain signature 88 100 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo3g03063 358 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mepo3g03063 358 Gene3D - 43 140 IPR036388 -
Mepo3g03063 358 Coils Coil 231 251 - -
Mepo3g03063 358 Pfam HSF-type DNA-binding 50 139 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03063 Mepo-Chr3 40779805 40782754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03063 24 356 HSF AT3G22830 53.333 3.72e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mepo3g03063 HSF_DNA-bind 8.8e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03063 K09419 - gmx:100794264 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g03063 3 40779805 40782754 Mepo4g02891 4 37867944 37870143 PCT