Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03042 ATGAATCAATATGATGGTCAATGTGTAATGGGAAAGACATTAATCAAAGAAGATCCCAAGAGGAAGGGTGCCTACATCTACAAATACAATCTTCAAGATCAAAACACCATTCATAGACCACTCTTTGTGATTCATAGGGCTAAGGATCTTATGAAAATGGATCTACAACCTCAAAGAGTGTATAAAGACCTGAATGAAGATTCATGCGGTGTTTGTAAAGACGGGGGAGATCTCATCTGCTGTGATGGTTGTCCTGCAGTTTTTCATCAAAGCTGCTTAGATATTAAAGAGCTTCCAGCGGGTGACTGGCACTGCATTCACTGCTCTTGTAAATTTTGTGGATCCTATGAAGACAAAAGTGAAAATCCCGAAATTGGATGTGTCTTTCATCATATAAACTGCGTTGAGGCCAACAGTGATGAGTTCAATCGTGAATATTTTTGTGGAAAAAGATGTCAACAGATATTTGAGAGGTTTGAAATGCTTCTACGGAATAGACATGACATTGGAGATGGATTTTCTTGCACATTTTTGCGTGAATTAGATAAAATGGACCCAACTACTTCAAAGATGGATGTTGCATTATCTGCAATGCATGAGTGTTTTCAACCCATTAGTTTGGATCTTGGAGGTCAGAAGATTGACATGTTCCCCAATATTCTAAGTAGCCGTTGGTCAAAATCCCGTGCTGTTAATTATGCCGGATTTTTTACTGTACTTCTAGAGAAAGGGAATGATACAATCTGTATTGCCACTCTCAGGATTCATGGACATCAAATGGCAGAGATGCCATTTATTGGAACACGAGCTAGGTTTAGGAAACAAGGAATGTGCCGTAGACTTCTCAATGCCATTGAGTCGGCACTGAGCTATATGAATGTGGAGATGCTGGTCATTCCATCAGCGCTGCAAGTACTACAGACTTGGACTTCATGTTTTGGATTTGAGAAAATTGACATGACTACAAAAGAATTACTGAAGACCAAAAATGTGGTGAAATTCTATGGAGTGGAAATGCTTCAGAAGAAAATACAAAAGCATGAGCTTCCAGAAGGAAATCTGGATTTCAATCAAGTCTTCCATTATCACAAGAACCAAAGAGAAATTAAGGAAGAGCAATCTCTGAGAGAGTCTTGTTTTGTCAATGGAAGAACTTCACGTCGCAGAAGACGTAGTTCTCCTTATGAATTAGGAAAAGCTCGTGAGAGAGGGAGTTCATCAAAATCAGCAACTGATTCTTGA 1242 0.3913 MNQYDGQCVMGKTLIKEDPKRKGAYIYKYNLQDQNTIHRPLFVIHRAKDLMKMDLQPQRVYKDLNEDSCGVCKDGGDLICCDGCPAVFHQSCLDIKELPAGDWHCIHCSCKFCGSYEDKSENPEIGCVFHHINCVEANSDEFNREYFCGKRCQQIFERFEMLLRNRHDIGDGFSCTFLRELDKMDPTTSKMDVALSAMHECFQPISLDLGGQKIDMFPNILSSRWSKSRAVNYAGFFTVLLEKGNDTICIATLRIHGHQMAEMPFIGTRARFRKQGMCRRLLNAIESALSYMNVEMLVIPSALQVLQTWTSCFGFEKIDMTTKELLKTKNVVKFYGVEMLQKKIQKHELPEGNLDFNQVFHYHKNQREIKEEQSLRESCFVNGRTSRRRRRSSPYELGKARERGSSSKSATDS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03042 413 CDD PHD2_CHD_II 68 108 - -
Mepo3g03042 413 SUPERFAMILY FYVE/PHD zinc finger 50 109 IPR011011 -
Mepo3g03042 413 ProSiteProfiles Zinc finger PHD-type profile. 66 111 IPR019787 -
Mepo3g03042 413 Pfam PHD-finger 69 111 IPR019787 -
Mepo3g03042 413 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 222 321 IPR016181 -
Mepo3g03042 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 169 IPR013083 -
Mepo3g03042 413 PANTHER PHD FINGER PROTEIN 12 60 383 IPR042163 GO:0003714|GO:0045892
Mepo3g03042 413 ProSitePatterns Zinc finger PHD-type signature. 69 108 IPR019786 -
Mepo3g03042 413 MobiDBLite consensus disorder prediction 389 413 - -
Mepo3g03042 413 SMART PHD_3 68 109 IPR001965 -
Mepo3g03042 413 MobiDBLite consensus disorder prediction 382 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03042 Mepo-Chr3 40521653 40527418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03042 68 348 PHD Transcription Factor Family AT1G05380 39.344 4.31e-71 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo3g03042 PHD 2e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g03042 - - psat:127129048 392.504