Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g03013 ATGACTGTGTTTTCATCAACCAAGCAGGTGGCTCGTAAACTCGGTGACGCAAATCTTCCTCGTCCATGGAGTCGACATTCAAGAAAAAAAGACAATAATGCGATCACCCCAGATGTCAACAATCATTCTAGAGCTAAAGGATACAAAGACAATTCTATGGACATTGATGACCCGAAACTTCGAGAATTTCTTCAGGTCATGCAACCTCGAGCAATGTCTAAGCTGTGGGCAAATGATACTTCAGTTGCAGCCAATGATGGTAGCAACCAAGCAACATTGAATAAGGAGACCGAAAATACATCAGTTGCAAACCATCCTATCTTAAGCTACTCACAAGTAGATGAATTACCAAATAACCCTAAATCCGATAAGAAACGTGAGCTTAAGCATGATGGAGTAATCTCTGATATGGATTATTTCAAGAGTAAAGTGACAACAGAGTGGTCTGATTCTGAAAGCAGTGATGACAACAATAGCGATGACAACAGTGATTCGGCGTCTTCTGATGACGATGACAATGAGAAACATAGTCATGCTACTGAACATGAAGAAAATTGTGGTAATAGCCCTTCTAAAAGAACCCCAAGAAGTGGTGCTCAAGAGTTAGATCTAGAAGACCCAGAAAATACCGTTGGAAAGGATGTTGCCAATGATAAGTCTCAAGTGAATGCATCTGAGGAAGACGGGCAATTATCAAATCCAGAAGATAAGAAAGGACTTTCTGAGCCGTGTCGACTGTTTGTCCGTAATCTACCATATTCGACCACTGAGGAGGAACTTGAAGAGCATTTCAGTCAGTTTGGCAGTGTCTCACAGGCTCATTTGGTTGTTGACAAGGATACTAAACGATCCAAAGGAATAGCTTATATTCATTTTTCAGCTCCAGAGTTTGCTGCCAGGGCGCTAGAAGAGTCGGACAATTCAATCTTCCAGGGGAGATTATTGCATGTTATGCCAGCTATACCAAGACATTCAAACAATGAAGAGAACAAGGACCAAGGCTCTAAAACTCTCAAACAACGAAGAGAGGAAGAAAGGAAAGCAGCTGAAGCCAAAGGAGATACCAGAGCATGGAATAGTCTGTTCATGCGCCCTGATACAATTGCAGAACACGCTTCTCGGAAATATGGTGTTAGTAAAAGTGATTTTCTGGATCCAGAAGCTGATGATCTTGCTTCACGTCATTCTCTGGCACAAACTCAAGTGATTTTTGAAACAAAAAATGCATTTAAAAAAGCTGGAGTGAATGTGGAGTCTCTGGAGGGGCTTGTGAATGATAAAGTTGATGGCGTAAAAAGAAGTAACCATGTACTTTTAGCAAAAAATTTGCCATATGGTGCTACGGAAAATGAACTTGCAAAGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCCTCGACAAAAACATTGGCCCTGGTTATTTTTCTCGAACCAGCAGAAGCTAAAGCTGCTTTTAGAGGTTTAGCTTACAAGCGTTACAAAGATGCTCCGTTATACTTGGAGTGGGCTCCTTCCAATATTCTTACCCCAAAATCAACATCTATAAATGATGAGGTGAATATTGGAATTGGTGAAAAGGATGTCAAGCGGGTGATATTAGAGAAAGACGTGGAAAGAATATCAGATGCTGACATTGATCCAGACAGAATAGAGGCTCGGTCCTTGTTTGTCAAGAACCTAAATTTCAAGACAACAGATGAGGGTTTGAGGGAACATTTCAGTGAACACATGAAGGAGGGGCGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAAAATGTTTCTATGGGATTTGGATTTGTTGAGTTTGATTCCACAGAGACTGCTACAAGTGTTTGCAACGATTTACAGGGGACTGTTTTGGACGGTCATGCTCTTATTTTACAACTCTGTCATGCCAAGAATGATGGTAAAGTACAAAAGAAAGTTGAGAAAGATAAGAGTTCAACTAAGTTGCTTGTGAGAAATGTTGCTTTTGAGGCAACGGAGAAGGATCTGAGACAATTATTTAGCCCGTTTGGCCAGATTAAAAGTTTAAGATTACCAATGAAGTTTGGAAATCATAGAGGATTTGCTTTTGTGGAGTATGTTACTCAGCAGGAGGCACAAAATGCACTTACAGCACTCTCAAGTACCCACTTGTATGGAAGACATCTGGTGATAGAGAGAGCGAAAGAAGGTGAGAGTTTGGAGGAACTGCGAGCTCGAACTGCTGCTCAATTTAATGAACATAGTGGATTTCAAGATACCAACATATCCAAGAAAAGGAAGGCCATCAGTATGTTAGATGAAGGAAATATGAAGTTTGAAAGGTTTGATTAG 2340 0.4038 MTVFSSTKQVARKLGDANLPRPWSRHSRKKDNNAITPDVNNHSRAKGYKDNSMDIDDPKLREFLQVMQPRAMSKLWANDTSVAANDGSNQATLNKETENTSVANHPILSYSQVDELPNNPKSDKKRELKHDGVISDMDYFKSKVTTEWSDSESSDDNNSDDNSDSASSDDDDNEKHSHATEHEENCGNSPSKRTPRSGAQELDLEDPENTVGKDVANDKSQVNASEEDGQLSNPEDKKGLSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEESDNSIFQGRLLHVMPAIPRHSNNEENKDQGSKTLKQRREEERKAAEAKGDTRAWNSLFMRPDTIAEHASRKYGVSKSDFLDPEADDLASRHSLAQTQVIFETKNAFKKAGVNVESLEGLVNDKVDGVKRSNHVLLAKNLPYGATENELAKMFGKFGSLDKIILPSTKTLALVIFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSNILTPKSTSINDEVNIGIGEKDVKRVILEKDVERISDADIDPDRIEARSLFVKNLNFKTTDEGLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHAKNDGKVQKKVEKDKSSTKLLVRNVAFEATEKDLRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGESLEELRARTAAQFNEHSGFQDTNISKKRKAISMLDEGNMKFERFD 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g03013 779 CDD RRM4_RBM19_RRM3_MRD1 436 507 - -
Mepo3g03013 779 CDD RRM5_RBM19_like 557 637 IPR034423 -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 146 240 - -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 96 130 - -
Mepo3g03013 779 SUPERFAMILY RNA-binding domain, RBD 433 511 IPR035979 GO:0003676
Mepo3g03013 779 CDD RRM6_RBM19_RRM5_MRD1 656 730 - -
Mepo3g03013 779 PANTHER RNA-BINDING MOTIF PROTEIN 14B 147 341 - -
Mepo3g03013 779 CDD RRM3_RBM19_RRM2_MRD1 245 318 - -
Mepo3g03013 779 SUPERFAMILY RNA-binding domain, RBD 239 330 IPR035979 GO:0003676
Mepo3g03013 779 FunFam Multiple RNA-binding domain-containing protein 1 427 529 - -
Mepo3g03013 779 FunFam Multiple RNA-binding domain-containing protein 1 650 755 - -
Mepo3g03013 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 436 508 IPR000504 GO:0003723
Mepo3g03013 779 Gene3D - 527 647 IPR012677 -
Mepo3g03013 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723
Mepo3g03013 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 556 639 IPR000504 GO:0003723
Mepo3g03013 779 SUPERFAMILY RNA-binding domain, RBD 544 643 IPR035979 GO:0003676
Mepo3g03013 779 MobiDBLite consensus disorder prediction 325 352 - -
Mepo3g03013 779 FunFam Nucleotide/nucleic acid binding protein 552 647 - -
Mepo3g03013 779 Gene3D - 211 356 IPR012677 -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 214 229 - -
Mepo3g03013 779 SMART rrm2_1 557 635 IPR003954 GO:0003676
Mepo3g03013 779 SMART rrm2_1 245 318 IPR003954 GO:0003676
Mepo3g03013 779 SUPERFAMILY RNA-binding domain, RBD 652 734 IPR035979 GO:0003676
Mepo3g03013 779 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 656 732 IPR000504 GO:0003723
Mepo3g03013 779 MobiDBLite consensus disorder prediction 198 213 - -
Mepo3g03013 779 Gene3D - 429 524 IPR012677 -
Mepo3g03013 779 Gene3D - 648 756 IPR012677 -
Mepo3g03013 779 SMART rrm1_1 245 318 IPR000504 GO:0003723
Mepo3g03013 779 SMART rrm1_1 657 728 IPR000504 GO:0003723
Mepo3g03013 779 SMART rrm1_1 437 504 IPR000504 GO:0003723
Mepo3g03013 779 SMART rrm1_1 557 635 IPR000504 GO:0003723
Mepo3g03013 779 MobiDBLite consensus disorder prediction 169 189 - -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 96 117 - -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 1 55 - -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 153 168 - -
Mepo3g03013 779 MobiDBLite consensus disorder prediction 320 352 - -
Mepo3g03013 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 658 725 IPR000504 GO:0003723
Mepo3g03013 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 441 499 IPR000504 GO:0003723
Mepo3g03013 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 558 632 IPR000504 GO:0003723
Mepo3g03013 779 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 316 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g03013 Mepo-Chr3 40208195 40232584 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g03013 549 739 Eukaryotic Initiation Factors Gene Family AT2G36660 30.052 7.73e-12 67.0