Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02997 ATGAGGTACATAGTTGATGAGCATCAAACCAATTCTTCAAAGTTGGAAGTGGATTCGACCGCCAACACGTCAAAACGTGCACATGCACAGGAGCCTGTTGATCCCCAAAAAGATGATGGTAAGAATAGCCTCATTTCTGTGGTGATTTCCAACCCTAAAGTGCTTGATTGCTACATTTGTTTTCAACCCTTAACCATTCCCGTCTTTCAGTGTGATAATGGTCATATTGCTTGCTCTACCTGCTTTCCTAAACTTAGGAACAAGTGTCCCAAGTGCTCATTGCGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATCTATTGCTATCTATTGAATTGTCATGTTCGAATGCAAAATATGGTTGCAGAGAGAAAATAAGTTACATTGGAAAGAGGAATCATGAAGAACAATGCATCCATGAGCCGTGTTACTGCCCTCTGCCGGATTGTGACTTTGTTGCATCATCAGAAGTGTTGTCTAAGCATTTCAGCCATAAACACGGGGATTCTCGGACCAAATTTTCTTATGCTCAGTCCTTTATTGTCTCCTTGAAGTCTAATGATGAAACTATTGTTCTTCAAGAGTATAATGATGGCAAACTATTTATTCTCAATAATAGTACTATGCTTTTTGGAAATGCAATCAATATTTGTTGCATTGGTCCAAAGTCTTCTCAGTCCGAGTATGGTTATGATATATTGGCTAGATCTCAAGCATGCAAACCGAAATTTCGGTCGTTGGCGAAGAATGTGCAACGGTTTACTTTATCAACTCTTTCATTAGAGTTCCTTGTGATTCCATTCGGTTCTTCTGTACCTCTCGAGCTAGAAATTTGCATAACCCCCATGGTAGCTCCTATATCCTTTTCTCTGCTTGTTTTTTTCCTATCAAAATCTTATTATTTTCTTTTGTTTTGA 918 0.3878 MRYIVDEHQTNSSKLEVDSTANTSKRAHAQEPVDPQKDDGKNSLISVVISNPKVLDCYICFQPLTIPVFQCDNGHIACSTCFPKLRNKCPKCSLRISSKRCKAIENLLLSIELSCSNAKYGCREKISYIGKRNHEEQCIHEPCYCPLPDCDFVASSEVLSKHFSHKHGDSRTKFSYAQSFIVSLKSNDETIVLQEYNDGKLFILNNSTMLFGNAINICCIGPKSSQSEYGYDILARSQACKPKFRSLAKNVQRFTLSTLSLEFLVIPFGSSVPLELEICITPMVAPISFSLLVFFLSKSYYFLLF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02997 305 ProSiteProfiles Zinc finger RING-type profile. 57 93 IPR001841 -
Mepo3g02997 305 MobiDBLite consensus disorder prediction 1 38 - -
Mepo3g02997 305 SUPERFAMILY TRAF domain-like 111 234 - -
Mepo3g02997 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 163 IPR013083 -
Mepo3g02997 305 SUPERFAMILY RING/U-box 54 97 - -
Mepo3g02997 305 Pfam Seven in absentia protein family 100 239 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo3g02997 305 CDD RING-HC_SIAHs 55 93 - -
Mepo3g02997 305 ProSiteProfiles Zinc finger SIAH-type profile. 110 168 IPR013010 GO:0008270
Mepo3g02997 305 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 282 IPR044286 -
Mepo3g02997 305 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02997 Mepo-Chr3 40056865 40061161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02997 53 284 C3H Transcription Factor Family AT2G41980 23.293 5.86e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02997 K04506 - mtr:11432566 330.487