Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02962 ATGGCTCCTGGAGGAGGTATTTTCAAAGAAGTTCTCGAGTCTCACCTCTTGACTTCAGATTATGAAACAGGCAAGGCTAAATCTGAGGCCAAGATTAACAGTACACTTACAAAATCCTCGAGTGTTGGATTGAATGGAAAGCACGGAACTAGTTCAAAGAATGGTGTGCATGACTTACTCGGGTGCCCTGTCTGCAAGAATTTGATGTATCCTCCAATTCACCAGTGTCCAAATGGCCATACATTATGTTCAAATTGTAAGATTGAAGTCCATAATCTCTGTCCCACCTGTCACCATGATCTTGGGAATATAAGGTGTTTGGCTCTGGAGAAAGTGGCGGAATCTTTGGAGCTTCCTTGCAGATATCAGAGTCTAGGGTGTAATGATATTTTCCCTTACTATGCTAAACTTAAACATGAGCAAAATTGTGGATTTCGTCCATACAATTGTCCTTATGCTGGATCTGAGTGCTCTGTGATGGGTGACATTCCAACTCTTGTTGATCATCTCAAGGATGAACACAAGGTTGACATGCATGATGGATTCACCTTCAATCACCGATATGTCAAAACAAACCCACATGAAGTTGAAAATGCCACATGGATGCTCACTGTTTTCAATTGCTATGGAAAGCATTTCTGTTTGCACTTTGAGGCTTTCCAGCTTGGTACAGCTCCAGTTTTTATGGCCTTCTTACGGTTTATGGGCGATGACAACGAATCAAAAAAATTCAGTTACAGCTTAGAAGTAGGTGCATATGGGCGCAAACTTATATGGCAAGGAATTCCTAGGAGCATACGCGACAGTCATAGTAAAGTTAGAGATAGTCAAGATGGACTAATAATTCAGAGGAATCAAGCCCTTTATTTTTCGGGTGGGGATAAACAGGAGTTGAAATTGAGAATCACCGGTCGTATATGGAAAGAAGATTGA 933 0.4126 MAPGGGIFKEVLESHLLTSDYETGKAKSEAKINSTLTKSSSVGLNGKHGTSSKNGVHDLLGCPVCKNLMYPPIHQCPNGHTLCSNCKIEVHNLCPTCHHDLGNIRCLALEKVAESLELPCRYQSLGCNDIFPYYAKLKHEQNCGFRPYNCPYAGSECSVMGDIPTLVDHLKDEHKVDMHDGFTFNHRYVKTNPHEVENATWMLTVFNCYGKHFCLHFEAFQLGTAPVFMAFLRFMGDDNESKKFSYSLEVGAYGRKLIWQGIPRSIRDSHSKVRDSQDGLIIQRNQALYFSGGDKQELKLRITGRIWKED 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02962 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 169 IPR013083 -
Mepo3g02962 310 Pfam Seven in absentia protein family 104 303 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo3g02962 310 FunFam E3 ubiquitin-protein ligase SINAT5-like 171 303 - -
Mepo3g02962 310 CDD RING-HC_SIAHs 60 98 - -
Mepo3g02962 310 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 114 IPR013083 -
Mepo3g02962 310 SUPERFAMILY TRAF domain-like 115 307 - -
Mepo3g02962 310 FunFam E3 ubiquitin-protein ligase SINAT3 114 170 - -
Mepo3g02962 310 ProSiteProfiles Zinc finger SIAH-type profile. 115 175 IPR013010 GO:0008270
Mepo3g02962 310 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 170 303 IPR008974 GO:0005515
Mepo3g02962 310 FunFam E3 ubiquitin-protein ligase SINAT5-like 13 113 - -
Mepo3g02962 310 SUPERFAMILY RING/U-box 55 104 - -
Mepo3g02962 310 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 39 309 - -
Mepo3g02962 310 ProSiteProfiles Zinc finger RING-type profile. 62 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02962 Mepo-Chr3 39700955 39704614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02962 1 310 C3H Transcription Factor Family AT2G41980 77.742 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02962 K04506 - gmx:100813966 588.571