Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02953 ATGGAGCTGGCTTTGAGCTTAGGCGACACACCAAAAGCATTCTCTTTGTTTGAAAACCCCACAAAATTACCCAACAAAGGTTTCTGCATACCACTTGAAGAACATGGTTTAGCTGAAAAATCCTCAGACCAAAAAAGTGATTCCTCAGATCCACCCATTCAGCTCAACCTTCTTCCTTCAACACCGGTTCTTCACTCCCAGCCTTCTCCACTTCTTCGAATTCCCTGGCTCAACGGTGCAATTGGCGTGGAACCGGCGAGGGTGTCGGATGTGAACCAATTCCGGTTGGCATCAGTGGAGGATACTACCGATGAGGGAGCTGCAGTTTCATCTCCGAATAGTGCAGCGTCGTATTATCAGATGGATTTTTCTATCATGAATGGTAATGGAGATGCTGCAGCCAGAAACAGTAGTCGTGAAGAGGGTGCGGATAGAAATACTAGCGATGATGAAGAAAATGGGTCCACAAGGAAGAAACTCAGACTCTCAAAGGAACAATCAGCTTTTCTTGAAGATAGCTTCAAAGAACACACCACTCTCAATCCTAAACAGAAACTTGCTCTTGCAAAACAATTAAATCTTCGTCCACGTCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTAAAGCAAACGGAAGTGGATTGTGAGTACTTAAAAAGATGTTGTGAGACTCTAACAGAAGAAAATAAAAGGTTACAAAAGGAACTTCAAGAATTGAGAGCTTTGAAAACTTCTCAACCATTCTACATGCAACTTCCGGCAACCACTCTCACTATGTGTCCTTCTTGTGAAAGGGTCGCTACCAACACCGCCGGAACCACTACCACTAAACAAACCACCTCGATTACCACCGGTGGGCACCGCCAACAATGA 885 0.4441 MELALSLGDTPKAFSLFENPTKLPNKGFCIPLEEHGLAEKSSDQKSDSSDPPIQLNLLPSTPVLHSQPSPLLRIPWLNGAIGVEPARVSDVNQFRLASVEDTTDEGAAVSSPNSAASYYQMDFSIMNGNGDAAARNSSREEGADRNTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENKRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNTAGTTTTKQTTSITTGGHRQQ 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02953 294 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Mepo3g02953 294 SMART HOX_1 155 217 IPR001356 GO:0003677
Mepo3g02953 294 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Mepo3g02953 294 MobiDBLite consensus disorder prediction 137 160 - -
Mepo3g02953 294 Coils Coil 219 249 - -
Mepo3g02953 294 MobiDBLite consensus disorder prediction 129 160 - -
Mepo3g02953 294 CDD homeodomain 157 214 IPR001356 GO:0003677
Mepo3g02953 294 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Mepo3g02953 294 Gene3D - 161 211 - -
Mepo3g02953 294 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Mepo3g02953 294 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
Mepo3g02953 294 MobiDBLite consensus disorder prediction 47 61 - -
Mepo3g02953 294 SUPERFAMILY Homeodomain-like 147 214 IPR009057 -
Mepo3g02953 294 MobiDBLite consensus disorder prediction 37 61 - -
Mepo3g02953 294 FunFam Homeobox-leucine zipper protein 18 141 218 - -
Mepo3g02953 294 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 285 - -
Mepo3g02953 294 MobiDBLite consensus disorder prediction 275 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02953 Mepo-Chr3 39617481 39619327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02953 52 271 Homeobox Transcription Factor Family AT5G47370 55.217 2.97e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo3g02953 Homeodomain 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02953 K09338 - gmx:100776113 338.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02953 3 39617481 39619327 Mepo3g02953 3 39617481 39619327 ECH
Mepo3g02953 3 39617481 39619327 Mepo4g02131 4 28602954 28605069 PCT