Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02952 ATGGCGGAAGAAAATTCTGATGCAATGAACCTTGATTTGAATCTGGGTCCGGACCCGGAACCACAAACTGGGTCGTTAGGGAATGAAGGTTTGAACTTGGATCATTGGATTGAGGAGGAGCCGTTTCAGAGAATTAGCGAAGCTGCTGCAAGGCTTAGGGGGAGACAGAGGTGGAGATGGAGGCAACTTTCTCCTCCTTATCCACAACAGCTTCAAAGGGTTCTACCTCAACCGTCTTATCATCAAGTTCATCAACTTGCTCCTGCACCCCATATTTATATCCCACCTGAAGCACGCAATATTTCAATTGAATTGAACAATTTTTTGGTCAATTCGGGGAATGGAATTGGATTACAGGCTGGGGAAGGAAGTGTGGCTGCTGTGGAGAGAATGGAGGAAGAAGAGGCGCCACTGAAAGCGTGTGAGAGCAACAATGGTGTTATGGAGGATGAGACCTTGCAGAAGAATAAGGATGATGTTGAAAAGGCTGGTGGCAGTGATGGGGACTTTTTTGATTGTAATATCTGTTTGGATTTGGCCAAGGAGCCTGTTTTGACTTGCTGTGGTCATCTGTTTTGTTGGCAGTGCTTATATCGATGGCTGCATCTGCATTCAGATGCTAGGGAATGTCCAGTTTGCAAGGGAGAGGTAACAGTTAAGAGTGTTACCCCTATATACGGCCGTGGAAACAGTACCCGTGCTCTTGAGGAGGATTCCACTCTAAAAATCCCTCCTAGGCCACAAGCAAAGCGTGTTGAGAGTCTGAGACAAACGCTTCAGAGAAATGCATTTGCTTTCCCTGTGGAGGAGATGATTCGGCGTCTTGGAAACAGAATTGATTTGACTAGGGATTTATCTCAGCCAAATGAACCAGAAAATGCTCGTGGAACAGCAGAGAGAACTACCTCCTTGCTAAGTAGGTTTTTGACATCTCGAGGCATGCGAAGAGAGCAGAATCCTGTACCACCCCCGGAGGATGCTGCGAGTTTGAATCAGAACAATGATAATGGTGCTGAGTTGGGAGGGGATACCCGCAGGGTGCAATCCCTTTTGCTTCGAAGATCACAATCACACAGAGCAACACTTTCAACTCTTTCATCAGCACTTACTTCTGCTGAAAGGTTGGTTGAGGCATATTTCCGTAGCAATCCATTGGGCAGAAACCAAGAACAACCACCTCCTTCAGGTGATGACAGAGATTCCTTTTCAAGCATTGCTGCTGTCATAAATTCCGAGAGCCAAGTGGACACTGCTGTAGAAATTGATTCCATGGTAACCTCTTCCAGGAGGAGAACAGATGCTTCAAGATTGTCTGATGTGGACAGTGGAGATTCTCGTGCTCCAAGGCGCAGACGTCTGAACTGA 1365 0.4667 MAEENSDAMNLDLNLGPDPEPQTGSLGNEGLNLDHWIEEEPFQRISEAAARLRGRQRWRWRQLSPPYPQQLQRVLPQPSYHQVHQLAPAPHIYIPPEARNISIELNNFLVNSGNGIGLQAGEGSVAAVERMEEEEAPLKACESNNGVMEDETLQKNKDDVEKAGGSDGDFFDCNICLDLAKEPVLTCCGHLFCWQCLYRWLHLHSDARECPVCKGEVTVKSVTPIYGRGNSTRALEEDSTLKIPPRPQAKRVESLRQTLQRNAFAFPVEEMIRRLGNRIDLTRDLSQPNEPENARGTAERTTSLLSRFLTSRGMRREQNPVPPPEDAASLNQNNDNGAELGGDTRRVQSLLLRRSQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPSGDDRDSFSSIAAVINSESQVDTAVEIDSMVTSSRRRTDASRLSDVDSGDSRAPRRRRLN 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02952 454 MobiDBLite consensus disorder prediction 423 454 - -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 384 401 - -
Mepo3g02952 454 SUPERFAMILY RING/U-box 169 226 - -
Mepo3g02952 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 227 IPR013083 -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 426 454 - -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 325 339 - -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 1 26 - -
Mepo3g02952 454 ProSitePatterns Zinc finger RING-type signature. 188 197 IPR017907 -
Mepo3g02952 454 SMART ring_2 173 213 IPR001841 -
Mepo3g02952 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 149 327 IPR045103 GO:0005783|GO:0006511|GO:0061630
Mepo3g02952 454 CDD RING-HC_RNF5-like 171 214 - -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 309 342 - -
Mepo3g02952 454 MobiDBLite consensus disorder prediction 382 401 - -
Mepo3g02952 454 ProSiteProfiles Zinc finger RING-type profile. 173 214 IPR001841 -
Mepo3g02952 454 Pfam Zinc finger, C3HC4 type (RING finger) 173 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02952 Mepo-Chr3 39601334 39604733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02952 1 445 C3H Transcription Factor Family AT3G58030 52.903 2.98e-130 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02952 K10666 - gmx:100811099 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02952 3 39601334 39604733 Mepo3g02952 3 39601334 39604733 ECH