Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02931 ATGGATATGCGCAAGAGAGGAAGACCCGAACATGGATTCAACAACAATGGCGGATTCAAGAAATCCAGACACGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTTCTGGCTGCCCATTTGGTGAGAGCTGCCACTTCTTGCACCATGTTCCTGGCGGTTATAATGCTGTTTCCCAGATGATGAATCTAACACCTGCAGCACCTCCTGCACCCAGAAATGTTCCAGCCCCACGAAATGCTCATGCACCCAATGGGTCTGCGCCATCTGCCGTTAAAAGCCGCATATGCAGCAAGTTTAATACTGCTGAAGGCTGCAAATTTGGTGACAAATGCCATTTCGCCCATGGAGAATGGGAACTTGGTAAGCCTGTAGCTCAATCATTTGATGATCACCGTCACAATGACCACCGTCACATGGGACCCCCCAATGCTGGCCGTTTTGGCGGTCATCGGATGGAGCCTCCTCCTGTTCCAGCTAGCTTTGGTGCCAATGCCACTGCCAAGATCAGTGTTGAAGCCTCCTTGGCTGGAGCTATCATTGGTAAGGGTGGTGTGAACTCAAAACAGATCTGTCGTCAAACTGGTGCCAAACTTGCAATTCGAGAGCATGAAGACCCAAATCTGAAAAACATTGAACTTGAGGGAACATTTGAACAAATTAAGGATGCAAGCAACATGGTGAAGGATTTACTGTTGACCCTGCAAATGTCTGCACCACCTAAATCAAACCAAGGCCCCCCTGGCCACCATGGCGCCCCTGGCCATCATGGAAACAACTTGAAAACAAAACTGTGTGAGAATTTTGCAAAAGGATCTTGCACTTTTGGAGATAGATGTCATTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 906 0.4768 MDMRKRGRPEHGFNNNGGFKKSRHEMESLSTGVGSKSKPCTKFFSTSGCPFGESCHFLHHVPGGYNAVSQMMNLTPAAPPAPRNVPAPRNAHAPNGSAPSAVKSRICSKFNTAEGCKFGDKCHFAHGEWELGKPVAQSFDDHRHNDHRHMGPPNAGRFGGHRMEPPPVPASFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLAIREHEDPNLKNIELEGTFEQIKDASNMVKDLLLTLQMSAPPKSNQGPPGHHGAPGHHGNNLKTKLCENFAKGSCTFGDRCHFAHGAAELRK 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02931 301 CDD KH-I_AtC3H36_like 178 242 - -
Mepo3g02931 301 Gene3D - 270 301 - -
Mepo3g02931 301 Gene3D - 96 133 - -
Mepo3g02931 301 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 164 246 IPR036612 GO:0003723
Mepo3g02931 301 Pfam KH domain 178 239 IPR004088 GO:0003723
Mepo3g02931 301 MobiDBLite consensus disorder prediction 1 27 - -
Mepo3g02931 301 MobiDBLite consensus disorder prediction 248 268 - -
Mepo3g02931 301 MobiDBLite consensus disorder prediction 1 32 - -
Mepo3g02931 301 FunFam Zinc finger CCCH domain-containing protein 96 133 - -
Mepo3g02931 301 SUPERFAMILY CCCH zinc finger 270 300 IPR036855 GO:0046872
Mepo3g02931 301 ProSiteProfiles Type-1 KH domain profile. 175 238 - -
Mepo3g02931 301 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Mepo3g02931 301 SUPERFAMILY CCCH zinc finger 100 132 IPR036855 GO:0046872
Mepo3g02931 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 36 60 IPR000571 GO:0046872
Mepo3g02931 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 128 IPR000571 GO:0046872
Mepo3g02931 301 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 272 295 IPR000571 GO:0046872
Mepo3g02931 301 SUPERFAMILY CCCH zinc finger 35 61 IPR036855 GO:0046872
Mepo3g02931 301 Gene3D K Homology domain, type 1 172 269 IPR036612 GO:0003723
Mepo3g02931 301 ProSiteProfiles Zinc finger C3H1-type profile. 101 129 IPR000571 GO:0046872
Mepo3g02931 301 FunFam Zinc finger CCCH domain-containing protein 265 301 - -
Mepo3g02931 301 MobiDBLite consensus disorder prediction 77 101 - -
Mepo3g02931 301 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Mepo3g02931 301 SMART c3hfinal6 103 128 IPR000571 GO:0046872
Mepo3g02931 301 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Mepo3g02931 301 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Mepo3g02931 301 PANTHER CCCH ZINC FINGER/TIS11-RELATED 24 153 IPR045877 GO:0003729
Mepo3g02931 301 SMART kh_6 174 243 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02931 Mepo-Chr3 39408680 39413083 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g02931 KH_1 5.2e-11 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02931 - - gmx:100777939 472.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02931 3 39408680 39413083 Mepo4g02100 4 28038831 28043271 PCT