Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02923 ATGGATTCAGGAGGTAACTCTTCTTCAGAAGAGTCCTCACTTAATGGCTTGAAATTTGGCCAACGAATCTATTTCGAAGATACAGCTCTTGCTGCTGCTACTACCACTACCATTGCTGCTGGTTCTCCTTCTTCTTCTTCTGGTTCAAAGAAAGGTAGAGGTGGGTCAGTTCAACATTCTCAACCACCTAGGTGTCAAGTTGAAGGATGTAAACTAGATCTGACTGATGCTAAAGCTTACTATTCTAGACACAAAGTTTGTAGCATGCACTCTAAATCACCTACTGTTACTGTTTCTGGTCTTCAACAAAGGTTTTGTCAACAATGTAGCAGATTTCATCAGCTTGCTGAGTTTGATCAAGGAAAAAGAAGTTGCCGGAGACGACTAGCTGGTCATAACGAGCGTCGCAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCACGTTTTGCCAGACTATCTTCATCTGTTTTTGGTAACAGCGACAGAGGTGGCAGCTTCTTAATGGAATTTGCTTCAAATTCGAAACATAGTCTGAGAAATTCACCCGGAAATCAAACCACAGCAATCGGTTGGCCTTGGCCGGGGAACACAGAGCCGCCATCTAGCAACCTTTTCTTGCAAGGTTCAGTGGGTGGGACAAGCTTCCCTGGTGCCAGGCATCCTCACGAGGAAACTTACACTGGAGTCACAGATTCAAACTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGGTTCTCAAAACACAGAACCAAGTCCTGGATTGAATAACATGCTGAATTTCAACGGGACACCCATGACACAACTTGGTACATCTTCTCATGGTGTAGCCATGCATCAAATTCCAAACAATTACGAGGTTGCCCCCGATCTTGGTCGGGCTCACATTTCGCAGCCTCTCGGTAGCCAACTCTCTGGTGAGCTTGATATGTCGCAGCAGGGAAGGAGGCATTATATGGATGTAGAACATTCCAGGGCCTATGAATCTTCTCAATGGTCACTGTGA 1005 0.4567 MDSGGNSSSEESSLNGLKFGQRIYFEDTALAAATTTTIAAGSPSSSSGSKKGRGGSVQHSQPPRCQVEGCKLDLTDAKAYYSRHKVCSMHSKSPTVTVSGLQQRFCQQCSRFHQLAEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRFARLSSSVFGNSDRGGSFLMEFASNSKHSLRNSPGNQTTAIGWPWPGNTEPPSSNLFLQGSVGGTSFPGARHPHEETYTGVTDSNCALSLLSNQTWGSQNTEPSPGLNNMLNFNGTPMTQLGTSSHGVAMHQIPNNYEVAPDLGRAHISQPLGSQLSGELDMSQQGRRHYMDVEHSRAYESSQWSL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02923 334 Gene3D - 55 126 IPR036893 GO:0003677|GO:0005634
Mepo3g02923 334 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Mepo3g02923 334 FunFam Squamosa promoter-binding-like protein 14 56 126 - -
Mepo3g02923 334 MobiDBLite consensus disorder prediction 36 63 - -
Mepo3g02923 334 SUPERFAMILY SBT domain 63 144 IPR036893 GO:0003677|GO:0005634
Mepo3g02923 334 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 8 266 IPR044817 GO:0003677
Mepo3g02923 334 MobiDBLite consensus disorder prediction 36 64 - -
Mepo3g02923 334 Pfam SBP domain 65 138 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02923 Mepo-Chr3 39322639 39326073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02923 17 334 SBP-box Gene Family AT2G42200 43.597 8.46e-67 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo3g02923 SBP 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02923 - - mtr:11430800 613.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02923 3 39322639 39326073 Mepo3g02923 3 39322639 39326073 ECH
Mepo3g02923 3 39322639 39326073 Mepo4g02080 4 27759379 27763289 PCT