Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02900 ATGGATTTGAATTCTCATTATCAACAACTCCAACAAAACCAACCAAATTCAAGGTTGCTTCGTTTTCGTTCAAGTTTCAAACAAGGTGAAGGTTGTGCTACAAATTCTGGTGAAACTTCTTCATCTACCTTTAGAGAGTTCATGGACCATAATCCTTCTAATCATAAAGGTGACAACAACGAGTCTTCATTATCTCAAAGACACATGAATTCTCAGCAAGGTTATAGAATGGATCAACACAAAGGTTTTTATACCAATCTTTTAAGGCAAAGTAGTAGCTCCCATGCTGGTCATTTCTCCAACAACAACATCATCTCCTTTGGAAATGGGTATGAATCTATCAAAGGTGTTGAAAACTATGATGGGGTGAATGACAGTGATAGTGAACTTACTCTATCTATGAACATATTGAACAATCAAATTGGCTTCTCACCAAGAAACTCTAAAATGGGGAGTGATGGCATTGGAACAACTAGCCGCGATGATCGAAGACAAGTAGGTAGCAACGACGATGCTCAATATTATGGTCATAAATTCATTTATGATTCTAATGACCAGAATGTAGGGGTGCGAAATCAAGTTGATACACTATCACATCACTTGAGTTTGCCAAGAAAGTCATCAGAAATGTATGTTGTGGAGAATTTGCTTCAGTTTCCAGATTCTGTTCCAAGCAGCATCAGAGCAAAGAGAGGCTTTGCAACACATCCTAGAAGCCTTGCCGAAAGGGTAAGAAGAACTCGGATAAGTGAACGAATGAGAAAATTGCAAGAGATTGTTCCAAACATTGATAAGCAAACTTGCACATCAGAAATGTTAGACTTGGCTGTAGAGTATATTAAAGATCTTCAAAAACAATTAAAGACTATGAGTGCAAAAAGAGCCAAGTGCAGATGCAGAAACAAGAAATGA 912 0.3761 MDLNSHYQQLQQNQPNSRLLRFRSSFKQGEGCATNSGETSSSTFREFMDHNPSNHKGDNNESSLSQRHMNSQQGYRMDQHKGFYTNLLRQSSSSHAGHFSNNNIISFGNGYESIKGVENYDGVNDSDSELTLSMNILNNQIGFSPRNSKMGSDGIGTTSRDDRRQVGSNDDAQYYGHKFIYDSNDQNVGVRNQVDTLSHHLSLPRKSSEMYVVENLLQFPDSVPSSIRAKRGFATHPRSLAERVRRTRISERMRKLQEIVPNIDKQTCTSEMLDLAVEYIKDLQKQLKTMSAKRAKCRCRNKK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02900 303 Coils Coil 280 300 - -
Mepo3g02900 303 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 298 - -
Mepo3g02900 303 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 236 299 IPR036638 GO:0046983
Mepo3g02900 303 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 233 283 IPR011598 GO:0046983
Mepo3g02900 303 FunFam Transcription factor bHLH130 family 234 302 - -
Mepo3g02900 303 Gene3D - 235 303 IPR036638 GO:0046983
Mepo3g02900 303 SMART finulus 239 289 IPR011598 GO:0046983
Mepo3g02900 303 MobiDBLite consensus disorder prediction 143 169 - -
Mepo3g02900 303 MobiDBLite consensus disorder prediction 28 74 - -
Mepo3g02900 303 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983
Mepo3g02900 303 MobiDBLite consensus disorder prediction 57 74 - -
Mepo3g02900 303 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02900 Mepo-Chr3 39150240 39152500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02900 42 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 43.561 7.23e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g02900 HLH 4.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02900 - - tpra:123888389 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02900 3 39150240 39152500 Mepo3g02900 3 39150240 39152500 ECH
Mepo3g02900 3 39150240 39152500 Mepo4g05051 4 59647864 59651604 ECH
Mepo3g02900 3 39150240 39152500 Mepo4g02032 4 26801807 26805403 PCT