Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02898 ATGGAACAAGCTACATTAGGATTAAGTGGATCCATTCACGATGATTCCGTTCAATTTGACGAAGAAATTCAAGGAATTATGGTACCGGCGCCGGCACCGGAAAACGCAAGCTCATTCACCGCACTGTTAGAGCTTCCACCTACGTTGGCGGTGGAGCTACTTCATTTGCCTGAACAGAAACCCTATCCTCCGAACTCTTCTAACGGAAATTTAACTTTTCCTACCAACGCCGCGTTGATTGAACGCGCCGCGAAATTCTCAGTGTTCGCCGGAGAGAATTCTTCACCGGGAGATTCGCGGCTGTTTCCGGTGGAAAGTGTGAAGAACGAGCCTCAAGAGACTGATTCGAATCCTTGCTCGACGCAAGAGTGTGTTTCGGATCCAGCTGAGAACAAGAATCAGAGAAACGTGAAGAGAAAAGAGCGAGAGAAGAAGGGTAAAGCGTTGTCGTCGAAGAAGAGCAAAAGCGTCGCCGATGAAACTTCCGGTGACGGTGAGAAGCTTCCCTATGTTCATGTTCGCGTCCGACGAGGTCAAGCTACTGATAGCCATAGCTTGGCAGAACGAGCTAGGAGAGAGAAGATTAATGCTCGTATGAAGCTTTTACAAGAGCTGGTTCCAGGATGCGACAAGATATCTGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTGCAAACTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCTGTTAACCCAAGAATTGATTTCAACTTAGACAGGTTATTGGCTGCTGATGGGTCGTCTTTAATGGACAGTAACTTACCTAGCGCCTTGGTTACACCTTTTGTGTGGCCAGAAATGCCACTCAACAGTAACAGACAGCATTATCAACAACAGTGGCAATTCGATGCATTCCATCAACCACTCTGGGGAAGGGAAGAAGACAATCAGAACTTCACGACTCCAGAAAACTCACTTTTGAGTTATAACTCCTCAGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTCTGA 1023 0.4633 MEQATLGLSGSIHDDSVQFDEEIQGIMVPAPAPENASSFTALLELPPTLAVELLHLPEQKPYPPNSSNGNLTFPTNAALIERAAKFSVFAGENSSPGDSRLFPVESVKNEPQETDSNPCSTQECVSDPAENKNQRNVKRKEREKKGKALSSKKSKSVADETSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQTLQRQVEILSMKLAAVNPRIDFNLDRLLAADGSSLMDSNLPSALVTPFVWPEMPLNSNRQHYQQQWQFDAFHQPLWGREEDNQNFTTPENSLLSYNSSANSASLHSNQLKMEL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02898 340 FunFam transcription factor bHLH48-like isoform X1 176 248 - -
Mepo3g02898 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 177 248 IPR036638 GO:0046983
Mepo3g02898 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 229 IPR011598 GO:0046983
Mepo3g02898 340 MobiDBLite consensus disorder prediction 91 165 - -
Mepo3g02898 340 Gene3D - 176 249 IPR036638 GO:0046983
Mepo3g02898 340 SMART finulus 185 235 IPR011598 GO:0046983
Mepo3g02898 340 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 87 324 IPR024097 GO:0006355
Mepo3g02898 340 MobiDBLite consensus disorder prediction 132 165 - -
Mepo3g02898 340 Pfam Helix-loop-helix DNA-binding domain 183 230 IPR011598 GO:0046983
Mepo3g02898 340 Coils Coil 219 239 - -
Mepo3g02898 340 MobiDBLite consensus disorder prediction 109 131 - -
Mepo3g02898 340 CDD bHLH_AtBPE_like 169 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02898 Mepo-Chr3 39119842 39125223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02898 15 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.359 1.22e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g02898 HLH 1.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02898 - - vun:114168708 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02898 3 39119842 39125223 Mepo3g02898 3 39119842 39125223 ECH
Mepo3g02898 3 39119842 39125223 Mepo4g02012 4 26369832 26375914 PCT