Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02887 ATGGCTGATAACCCTTACTCTAATCTTTTCTCTTCTTCATCAACTTTCTTCCAATTCAACCATATTTTTCCATCTTCAAATTCAAACCCTTCTCCACAAAACCACCACCCTTTTCTTCACCATCACAACAACAATAACCACACCTTTTTCCACTATCATCATCATATTTCCTCTTCTTCACCACCTTCTCCTCCTCTAAGAGAAGAACTACCTCTTTTAAGCCTAATTCAAACAAAACAAGAAAAATATGATGAAGATCAACAAGAACATGAGGTGGATATTCAAGACCTTCCTTGCACTGCTATGGATTTAGAAGAAAGGGAAGAAGATGGTAGAAGTAGCAGTACTACTGTTACTGTTGCACTTCACATAGGTTTACCAAACCCTAGTGCTGCTGAAATGGCTTCTGTACTTTCTTCCTCTAATAATTCCTCAGAGATCATTGTCACTGATAAAGAACATGGTGGTGAGGATTCTTGTTCAGGATTCATGGTTAATAATAGGCTTAACAAAGGACAATATTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCAACTCAGTTTTCTTGCCCTGTTTGCTCCAAAACTTTCAATAGATATAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGTCCTGAATCTCTAAGAGGTACACAACCAACAGGAATGCTAAGGCTACCTTGTTACTGTTGTGCACCAGGGTGCAGAAACAACATTGATCATCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGGAAACATGGAATTAAGCCATTCATGTGTAGAAAATGCAGCAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACTCATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGTTCTGATTTTAAACATAAGAGGTCTCTTAAAGATCATATCAAAGCTTTTGGAAGTGGACATGCTGCTTATGGGTGTGATGGATTTGAAGAAGAGGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGAATGA 1044 0.3879 MADNPYSNLFSSSSTFFQFNHIFPSSNSNPSPQNHHPFLHHHNNNNHTFFHYHHHISSSSPPSPPLREELPLLSLIQTKQEKYDEDQQEHEVDIQDLPCTAMDLEEREEDGRSSSTTVTVALHIGLPNPSAAEMASVLSSSNNSSEIIVTDKEHGGEDSCSGFMVNNRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCSKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGCDGFEEEDEPASEVEQDNE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02887 347 Pfam Zinc finger, C2H2 type 189 208 IPR013087 -
Mepo3g02887 347 Gene3D Classic Zinc Finger 188 211 - -
Mepo3g02887 347 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Mepo3g02887 347 SMART c2h2final6 189 211 IPR013087 -
Mepo3g02887 347 SMART c2h2final6 273 293 IPR013087 -
Mepo3g02887 347 Gene3D Classic Zinc Finger 251 324 - -
Mepo3g02887 347 FunFam zinc finger protein WIP2-like 188 211 - -
Mepo3g02887 347 PANTHER ZINC FINGER PROTEIN WIP2 38 345 IPR043584 GO:0003700|GO:0010468
Mepo3g02887 347 FunFam Zinc finger protein WIP2 242 324 - -
Mepo3g02887 347 SUPERFAMILY beta-beta-alpha zinc fingers 185 211 IPR036236 -
Mepo3g02887 347 SUPERFAMILY beta-beta-alpha zinc fingers 255 293 IPR036236 -
Mepo3g02887 347 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02887 Mepo-Chr3 39011342 39014042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02887 4 347 C2H2 Transcription Factor Family AT3G57670 62.500 3.11e-142 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g02887 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02887 - - gmx:100802907 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02887 3 39011342 39014042 Mepo3g02887 3 39011342 39014042 ECH
Mepo3g02887 3 39011342 39014042 Mepo6g03992 6 52147154 52149822 ECH
Mepo3g02887 3 39011342 39014042 Mepo4g01990 4 26040454 26043880 PCT