Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02883 ATGGAGAGTAAGAAGAAAGCATCATCCCCTCTCTCTTTGGACCAATTCATCTCTATCACAACCCCTCTTCTCGACTTGGAAAAGGATGCTGAGATATCGAGCTCAATTGCCACTGGCGCGTCGAGGAATTTGGATACTGCTCAAAAGAGAGGATCAACAATCCTCAATTTGAAGTGTGTGGATGTTCAGACGGGGCTTATGGGAAAGTCTCTGATCGAGTTACAATCCACAAAAGCAGATGTGCTTCCTGCTCACAAGTTTGGCACTCATGATGTTGTTGTTTTGAAACTCAACAAGGCTGATTTAGGTTCTCCTGCTCTTGGGCAAGGTGTAGTTTACAGATTAAAGGACTCATCAATTACTGTTGCTTTTGATGATATACCAGAAGATGGTTTAAACAGTCCCCTAAGGCTGGAAAAAGTTGCAAATGAGGTGACATATCACAGGATGAAAGATGCATTAATACAGTTGAGTAAAGGAGTGCATAAGGGTCCTGCTTCTGATCTAATTCCTGTCTTGTTTGGGGAGAGGCAACCAACAGTGTCCAAGAAGGATGTAGCCTTCACTTCCATTAATAAAAATCTTGATCACTCTCAGAAAGATGCAATTTCCAAAGCCCTATCGTCGAAGAATGTTTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTGAAACGTGGATCTAAGATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATCGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGGATTGGTCATCCTGCACGTTTATTGCCTCAAGTGGTGGACAGTGCACTGGATGCCCAGGTACTTCGAGGAGATAATAGTGGTCTCGCAAATGACATTCGGAAAGAAATGAAGGTATTGAATGGAAAGCTGCTAAAAACCAAAGAAAAAAATACAAGGAGGGAGATACAGAAGGAACTTAGGACTCTGTCCAGAGAAGAGCGGAAAAGGCAGCAGCTTGCTGTTACAGATGTGATTAAAACTTCAGATGTAATATTAACTACTCTGATTGGGGCTTCCTCTAAGAAACTTGGCAACACTTCATTTGATTTAGTGATTATTGACGAAGCTGCTCAAGCACTTGAGGTTGCATGCTGGATACCTCTGCTGAAGGGTACAAGATGTATACTTGCAGGAGACCATCTTCAACTTCCTCCAACGATTCAAAGTGTTGAAGCTGAGAAGAAAGGCTTAGGAAGAACCCTCTTTGAAAGACTTGCAGAACTGTATGGAGATGAAGTCACATCTATGCTTACTGTCCAGTACCGTATGCATCAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGGTCAAGGCTCATGCATGTGTTGCTGCACATATGCTATATGATCTTGAGGGCGTGAAGAAGACATCTTCAACTGAACCAACCCTTCTTCTCATAGACACAGCTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCACTCTTAATGAAGGTGAATCTGAAGTTGCTATGGCTCATGCAAAGCGATTGGTGCAAAGCGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCACAGGTTGTTTTACTGAAGATGTTAAAAAACAAGGAGAACTCGCTGAAGGATATTGAAATCTCAACAGTTGATGGTTTCCAGGGAAGAGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAGGAGGTGGGCTTTCTGAGTGATCGCCGGCGAATGAATGTGGCCGTGACACGTGCAAGAAGACAATGCTGTATTGTCTGTGACACTGAGACAGTCAGTAGTGATGGATTTCTAAAGCGGTTGATTGAATATTTTGAAGAGCATGGCGAATATCAGAGTGCATCCGAGTACCAGAATGAATAG 1938 0.4231 MESKKKASSPLSLDQFISITTPLLDLEKDAEISSSIATGASRNLDTAQKRGSTILNLKCVDVQTGLMGKSLIELQSTKADVLPAHKFGTHDVVVLKLNKADLGSPALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKVANEVTYHRMKDALIQLSKGVHKGPASDLIPVLFGERQPTVSKKDVAFTSINKNLDHSQKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRIGHPARLLPQVVDSALDAQVLRGDNSGLANDIRKEMKVLNGKLLKTKEKNTRREIQKELRTLSREERKRQQLAVTDVIKTSDVILTTLIGASSKKLGNTSFDLVIIDEAAQALEVACWIPLLKGTRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAELYGDEVTSMLTVQYRMHQLIMDWSSKELYNSKVKAHACVAAHMLYDLEGVKKTSSTEPTLLLIDTAGCDMEEKKDEEDSTLNEGESEVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKENSLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCIVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQNE 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02883 645 SMART ultradead3 191 442 IPR014001 -
Mepo3g02883 645 Pfam AAA domain 418 614 IPR041679 -
Mepo3g02883 645 Gene3D - 21 425 IPR027417 -
Mepo3g02883 645 FunFam DNA-binding protein SMUBP-2 39 141 - -
Mepo3g02883 645 Pfam AAA domain 195 409 IPR041677 GO:0004386
Mepo3g02883 645 Gene3D - 441 645 IPR027417 -
Mepo3g02883 645 SMART AAA_5 209 431 IPR003593 GO:0016887
Mepo3g02883 645 NCBIfam IGHMBP2 family helicase 343 640 IPR004483 GO:0003677|GO:0005524
Mepo3g02883 645 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 631 IPR027417 -
Mepo3g02883 645 FunFam P-loop containing nucleoside triphosphate hydrolase 441 645 - -
Mepo3g02883 645 Gene3D - 39 141 - -
Mepo3g02883 645 CDD SF1_C_Upf1 443 631 IPR047187 -
Mepo3g02883 645 CDD DEXXQc_SMUBP2 194 442 - -
Mepo3g02883 645 Coils Coil 296 335 - -
Mepo3g02883 645 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 11 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02883 Mepo-Chr3 38947798 38954930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02883 168 378 Core DNA Replication Machinery Family AT1G08840 27.962 9.23e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02883 - K19036 gmx:100810545 1144.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02883 3 38947798 38954930 Mepo3g02883 3 38947798 38954930 ECH