Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02867 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTTTCTGATTGCAGACTCATCGATTTCTTGCCCTTCACTTGTGATCGTTGCAATCAGGTATATTGTTTGGGGCACCGAAGTTATATTGAGCATAATTGTACAAAACCCAACAAACAAGATGTCACCGTTGTTATATGTCCACTTTGTGCTAAAGGGGTTCGCCTAATTCCAGACCAAGATCCAAACATAGTTTGGGAGCATCATGTGAACACAGACTGTGATCCATCAAATTATGAAAAAGCCACAAAGAAGAAAAAGTGTCCTGCCCCAGGATGCAGAGAGACCTTAGTATTCTCAAACACAATCAAGTGTAGGGACTGTGAGGTTGACCATTGTTTGAAGCACAGGTTTGGACCTGATCACAAATGTCCTGGACCCAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTGGAATATGAGTAGTGGTAAAGAAGAGTCAAAACCCAATTTAACTTCAACCTCATCATCTAAATGGACGTCAAGCCTTCTTGACTTGGCTTCTAAATTGAGTGGGATAGGACAGAGCAGTGGCAGCGGTAATAGTAATAATCAACTGGAGAAGTGTCCGCTATGTGATGCTAAGTTTTCCTCGTCAAGTAGTTTGGTGGACCATGCAAAAAAAGTTCATCAAAGGAGTGGCGGCAACCAATATGGGGCAAAGAAAGTGCTGATTTCTGCATGTCCCAAGTGTAGTAAAGGTTTTTTAGACCCGGTTTCACTTGTGGAGCATGTTGAGAGGGATCATGGTGGTAGTTCGTGA 807 0.4226 MGTPEFPDLGKHCSVSDCRLIDFLPFTCDRCNQVYCLGHRSYIEHNCTKPNKQDVTVVICPLCAKGVRLIPDQDPNIVWEHHVNTDCDPSNYEKATKKKKCPAPGCRETLVFSNTIKCRDCEVDHCLKHRFGPDHKCPGPKKLETSFSFMSLWNMSSGKEESKPNLTSTSSSKWTSSLLDLASKLSGIGQSSGSGNSNNQLEKCPLCDAKFSSSSSLVDHAKKVHQRSGGNQYGAKKVLISACPKCSKGFLDPVSLVEHVERDHGGSS 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02867 268 SUPERFAMILY AN1-like Zinc finger 93 143 IPR035896 -
Mepo3g02867 268 ProSitePatterns Zinc finger C2H2 type domain signature. 204 225 IPR013087 -
Mepo3g02867 268 ProSitePatterns Zinc finger C2H2 type domain signature. 243 264 IPR013087 -
Mepo3g02867 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 241 268 IPR013087 -
Mepo3g02867 268 SUPERFAMILY beta-beta-alpha zinc fingers 203 260 IPR036236 -
Mepo3g02867 268 Gene3D Classic Zinc Finger 202 264 - -
Mepo3g02867 268 SUPERFAMILY AN1-like Zinc finger 6 52 IPR035896 -
Mepo3g02867 268 Gene3D - 2 58 IPR035896 -
Mepo3g02867 268 Gene3D - 86 165 IPR035896 -
Mepo3g02867 268 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Mepo3g02867 268 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Mepo3g02867 268 ProSiteProfiles Zinc finger C2H2 type domain profile. 202 225 IPR013087 -
Mepo3g02867 268 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Mepo3g02867 268 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Mepo3g02867 268 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Mepo3g02867 268 Pfam C2H2-type zinc finger 203 225 - -
Mepo3g02867 268 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Mepo3g02867 268 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 233 - -
Mepo3g02867 268 SMART c2h2final6 241 264 IPR013087 -
Mepo3g02867 268 SMART c2h2final6 202 225 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02867 Mepo-Chr3 38762426 38764665 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02867 1 268 C2H2 Transcription Factor Family AT2G41835 58.451 2.60e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g02867 zf-AN1 6.2e-08 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02867 3 38762426 38764665 Mepo3g02867 3 38762426 38764665 ECH