Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02828 ATGGATCACTCCACTCTCTTCAATCTTCAGTCTTTGGTGAACTTTGAACTTCCAGAACAAGATGATGATTTTGAATATTATGGGAATAGTAGTCAGGATGAGAGCAGAATCACCAGAGGTGGGGCAATTGGAAGTCATAGTAATGGGAATGTGTCTGGAAGGGATGTAAATTTGTTGAAGAGAAGTTGGTCTAGAAACAGTGATAACGAGGAAAAGAGTGGTTTTTATGAGACACCTGTGATGGAGGAACGATACCGATCAATGCTTGGAGATCATATTAAGAAATACAAGCGGAGGTTTAAGGGTAACTCAAGTAGTCCCGGCCCAAATCAGGTTCCTGTTCCTTTTTTGAAAAGTAATAATGGATTAAAAGCTCACAAGCCAGGGAATGAGCGCAACAGAGGATTGCATGATGATGAAACTTTATCTGAATGGATAAATGGTTCCAATGCTCAGAAATCAGGGAACTTCCTTGATACAGATTTCATACCGCAACATCGCACTAATAGGGTTAGGTATGAACCTGCATATGTGGATGTTGGGAATGGCATAGCTTATAAGATTCCTCCAATTTACGATAAGTTGGCACCACTTGTGAACCTTCCAAGCCTCTCAGATATCCACGTTGAGGACTTTTTCCTAAAGGGTACATTGGATTTGGGCTCCTTGGCTGAAATGATGGCATCCGATAAGAAGTTTGGAAATAGAAACCGAGCAGGCATGGGGGAAACTTTATCCCAATATGAATCACTTCAAGCACGTCTAAAGGACACGTCAGCTTCTAATTCAACCCACAAGTTCAGTCTGAAATTATCTGAGGCTGATTTGAATTCCTCCATTCCAGAGGGGGCAGCTGGAAGGATAAAACGGTCTATTTTATCTGAGGGTGGTATATTGCAGGTTTACTATGTGAAGGTTTTGGAGAAAGGCGACACTTATGAGATCATTGAAAGAAGCTTACCCAAGAAACAAAAGGTAACGAAAGACCCTGCTTTTATAGAGAAAGAGGAAATAGAAAAATTGGGAAAGATTTGGGTAAACATTGTAAGAAGAGATCTACCAAGACATCATCGGAATTTTACTACTTTTCATCGAAAGCAGGTCGTTGATGCCAAGAGGGCCGCAGATATTTGTCAAAGAGAGGTTAAAATGAAAGTTAGTAGATCGCTTAAATGGACGAGAACTGCTAGCATGCGCACCCGAAAACTAGCTAGAGACATGCTACTATTCTGGAAACGAATAGATAAGGAGATGTTAGAAATTAGGAAAAGGGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGCGAGCAAGAGCTTCGAGAAGCAAAAAGGCAGCAGCAAAGACTAAATTTTCTTATACAGCAGACTGAGCTGTACAGCCACTTTATGCAAAACAAGTCAATAGCTTCAGAAGCTCTATCCATGGGAGACGAAAATACAAATGATGAAAATGCGCTGATCAACTCATCAGCTGCTGGTCCAAACGAGGAGGAAGATCCTGAAGAGGCTGAATTAAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTTTCTAAGCAGAAAATGTTGACAAGTGCTTTTGACACTGAATGCTTGAAGCTGCGCCAGGCTGGTGAATCTGATTCACTTCAACCAGAAGTTTCTGGAGCAAGCAATATTGACTTGAAGACCCCCTCCACCATGCCTGTGGCATCCACAGTTCGGACACCTGAATTATTCAATGGCTGTCTCAAAGATTATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTTTTAGCCCATTTAGCTGAGGAGAAAAACATATGGGGACCTTTTTTGATTGTTGCACCCGCTTCTGTATTAAATAATTGGAATGAGGAGCTCGAGCGCTTCTGCCCTGAACTTAAAGTACTTCCTTATTGGGGTGGGCTTTCAGAGCGGACAGTGCTCAGGAAAAGTATGAACCCAAAGGATCTTTATCGCAGGGAAGCTAAATTTCACATTCTCATCACAAGCTACCAGCTGTTAGTCTCTGATGAGAAGTATTTCCGGCGCGTGAAATGGCAGTATATGGTTTTAGACGAAGCTCAGGCAATTAAAAGTTCCAACAGTATAAGATGGAAGACACTCCTCAGCTTTAACTGTCGGAATCGCCTACTGCTGACTGGTACACCCGTTCAGAATAATATGGCTGAGTTATGGGCTCTTCTTCACTTCATTATGCCAACTTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCGAAAGGAATTGAGAACCATGCAGAACATGGGGGTACTTTGAATGAGCACCAACTTAATCGATTGCATTCAATTATAAAGCCTTTCATGTTGCGTCGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTAGCAAAACTGAAATTACCGTGCACTGCAAGTTAAGTTCTCGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGGGGACAGCTCAATGAGAAGAAAATCCTGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGTTGTTTGAAAGGAGTGAAGGAAGCACGTACCTTTACTTTGGAGAGATTCCAAATTCCCTTCCTCCTCCTCCATTTGGGGAGTTAGAGAATGTATACTATTCTGGTGGGCACAACCCCATCTCATATGAGATACCGAAACTTGTCTATCAAGAAATTATGCGAAGTTCTGAAACTCTCAATTCAGCTGTTGGTCATGGTTTCTGCAGAGGATCTTTTCCAAAGTATTTTAATATTTTTAGGCCAGAAAATGTTTATCAATCTGTCTTTTCAGAAGATATGCGTGTTAAAAGTGGAACCTTTGGGTTTACCCATTTGATGGATTTATCTTCACAAGAGGCGGCATTTCTGGTTAATGGTTCTTTTATGGAGCGACTATTATTTTCTATGATGAGATGGGACCAGAAATTCATTGATGAAGTTGTAGACTTTCTTATGGAGACCACAGATGATGATCTGGAATGTAGTTCCCTTGAAAAAGGAAAAGTGAGAACTGTCACACGAATGTTATTGGTGCCATCAAGATCTGAGACTAAGTTTCTTCAGAACAGATTACCAACTGGACCCAGCCATGCTCCTTTTGAGGCCTTGGTTGTGCCACATCAGGAGAGGCTTTTCTCAAACGCAAGGCTTCTTCACTCAGCTTACTCATATATCCCACCAAGTAGAGCACCCCCAATCGGTGCTCACTGTTCTGATAGGAACTTTTACTATAAAATGATTGAGGAACTACATGATCCATGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTTTAATGGTCCTAGCAAGCCAGCTGGTTCTCATCATTTAATTCAAGAGATCGACTCTGAACAACCTGTTTGTAAGCCTGCTCTTCAGTTAACACACAGTATTTTTGGGTCTTCTCCACCTATGCGAAATTTCGACCCAGCAAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGAGCCGGAAATCATCGTGTTCTGTTGTTTGCTCAGATGACCAAGATGCTGAATATTTTGGAGGACTATATGAACTATAGAAAGTACAAGTATTGTAGACTTGATGGATCAACATCTATTCAGGATCGCAGAGATATGGTCAGAGACTTTCAGCATAGGTCTGATATTTTCGTGTTCTTACTGAGTACTAGAGCCGGTGGATTGGGTATTAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGATCTACAGGCGATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACCGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATCCTTCTAAGAGCTAGTCAGAAAAGTACAGTACAGAACCTTGTCATGACCGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTCGTATCTTTGCTTCTGGATGATGTTCAGTTGCAGCAGAAATTTAAAGATATAGCTCAGGTAAGGGATAAGCAAAAGAAAAAACAACCTATGAAGGGTATATTGGTCAATGAAGATGGTGATGCATCTCTGGAAGATGTATCAAACCCTGTAGCCCTGGGTACAACAGATTCTGATCTTGCAGTCGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAATCTGCCTCCGATAAAAAAACTTTGAGGCCAAAAAATTCTCAAAAGACTAGTGAATTTGATGCCATGCCTATGGACAACGAGTTGGATGATACTGATCCAGTGGTTCAGAAACCCAAGAGACCAAAGAGAATAAAGAAGAATGTGAATGAAATGTTTGAAGAGGCTCGTACTGGTACAGCTACCATGGTCCCAGGGCAGACACAATATCAACCTCCACATGATGGAGGTTCCAAAATAGAATCAGGCCAAGGCACCTAA 4542 0.413 MDHSTLFNLQSLVNFELPEQDDDFEYYGNSSQDESRITRGGAIGSHSNGNVSGRDVNLLKRSWSRNSDNEEKSGFYETPVMEERYRSMLGDHIKKYKRRFKGNSSSPGPNQVPVPFLKSNNGLKAHKPGNERNRGLHDDETLSEWINGSNAQKSGNFLDTDFIPQHRTNRVRYEPAYVDVGNGIAYKIPPIYDKLAPLVNLPSLSDIHVEDFFLKGTLDLGSLAEMMASDKKFGNRNRAGMGETLSQYESLQARLKDTSASNSTHKFSLKLSEADLNSSIPEGAAGRIKRSILSEGGILQVYYVKVLEKGDTYEIIERSLPKKQKVTKDPAFIEKEEIEKLGKIWVNIVRRDLPRHHRNFTTFHRKQVVDAKRAADICQREVKMKVSRSLKWTRTASMRTRKLARDMLLFWKRIDKEMLEIRKREEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSIASEALSMGDENTNDENALINSSAAGPNEEEDPEEAELKKEALKAAQEAVSKQKMLTSAFDTECLKLRQAGESDSLQPEVSGASNIDLKTPSTMPVASTVRTPELFNGCLKDYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLIVAPASVLNNWNEELERFCPELKVLPYWGGLSERTVLRKSMNPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSIIKPFMLRRVKKDVVSELTSKTEITVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKKILNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELENVYYSGGHNPISYEIPKLVYQEIMRSSETLNSAVGHGFCRGSFPKYFNIFRPENVYQSVFSEDMRVKSGTFGFTHLMDLSSQEAAFLVNGSFMERLLFSMMRWDQKFIDEVVDFLMETTDDDLECSSLEKGKVRTVTRMLLVPSRSETKFLQNRLPTGPSHAPFEALVVPHQERLFSNARLLHSAYSYIPPSRAPPIGAHCSDRNFYYKMIEELHDPWVKRLFVGFARTSDFNGPSKPAGSHHLIQEIDSEQPVCKPALQLTHSIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYCRLDGSTSIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQQKFKDIAQVRDKQKKKQPMKGILVNEDGDASLEDVSNPVALGTTDSDLAVDPEGSKSSNKKRKSASDKKTLRPKNSQKTSEFDAMPMDNELDDTDPVVQKPKRPKRIKKNVNEMFEEARTGTATMVPGQTQYQPPHDGGSKIESGQGT 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02828 1513 Gene3D - 815 884 IPR027417 -
Mepo3g02828 1513 Pfam SNF2-related domain 592 879 IPR000330 GO:0005524|GO:0140658
Mepo3g02828 1513 Gene3D - 1143 1402 IPR027417 -
Mepo3g02828 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 561 805 IPR027417 -
Mepo3g02828 1513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 589 760 IPR014001 -
Mepo3g02828 1513 SMART ultradead3 573 768 IPR014001 -
Mepo3g02828 1513 MobiDBLite consensus disorder prediction 478 510 - -
Mepo3g02828 1513 MobiDBLite consensus disorder prediction 1488 1513 - -
Mepo3g02828 1513 MobiDBLite consensus disorder prediction 23 50 - -
Mepo3g02828 1513 Pfam DNA-binding domain 340 467 IPR020838 GO:0003677
Mepo3g02828 1513 MobiDBLite consensus disorder prediction 1374 1513 - -
Mepo3g02828 1513 FunFam Putative DNA helicase INO80 549 827 - -
Mepo3g02828 1513 ProSiteProfiles DBINO domain profile. 344 469 IPR020838 GO:0003677
Mepo3g02828 1513 PANTHER HELICASE SRCAP-RELATED 122 509 - -
Mepo3g02828 1513 Pfam Helicase conserved C-terminal domain 1195 1304 IPR001650 -
Mepo3g02828 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1362 IPR027417 -
Mepo3g02828 1513 SMART helicmild6 1221 1304 IPR001650 -
Mepo3g02828 1513 Coils Coil 416 455 - -
Mepo3g02828 1513 Gene3D - 573 814 IPR038718 -
Mepo3g02828 1513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1195 1345 IPR001650 -
Mepo3g02828 1513 CDD SF2_C_SNF 1183 1315 - -
Mepo3g02828 1513 MobiDBLite consensus disorder prediction 30 50 - -
Mepo3g02828 1513 FunFam DNA helicase INO80-like protein 1163 1414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02828 Mepo-Chr3 38283877 38295098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02828 597 889 RAD5 or RAD16-like Gene Family AT5G22750 28.011 6.02e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g02828 SNF2_N 4.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02828 K11665 - gmx:100780615 2455.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02828 3 38283877 38295098 Mepo3g02828 3 38283877 38295098 ECH