Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02726 ATGGAAGACTCACAAGAACCCTTCTCTCAATCCCAATCCCAATCCGAAACCTACCTCGCCGGTTTCGTAATGGCCAACATCGTCGGCATTAAACACTATTCCGGCACCATCACCGGCCGCGAAATCCTCGGCCTAATCCGCGAACCTCTAAACCCATACGACTCCAACGCCATCAAAGTCCTCAACACTCAATCTCTTCAAGTCGGTCACATCGAACGCGCCGTCGCCGCCGCTCTCGCTCCTCTCCTCGACGCTCACATCATCCACGTCGAAGCCATCGTCCAAACCCGCTCTAACAATAACAAATTCCGTATCCCTTGTCAGATTCATATCTTCGCTCATCAATCTGCTTTTGATGCTGTTCATGACGCTTTTAACGGTTCCAATGTTCATTTCATTTCGTATACTGATCCTTCGTTTACTCTTTCTCATTCCGCCGCCGTTAAAGAAACACGCGCTGACACCGTCAGCGCTAATTCTGCAACCGTAACTAACTCAGGAAATAGTAAAAACCTAGACCAAATCTTCAAACTCCTTCGAGAAAACCTAGCTTCCAAAACCCTAGTTTCTGAACCGTTAAACCCTCCTTCTAGCATTATTAAATCAGAGCTTCTGCAGCATCAAAAAGAAGCACTGGGATGGCTTTATCATCGCGAAAGTACTGATGATTTACCGCCGTTTTGGGAGGAGAAAGAGGGGAATTTCGTCAATGTGTTGACGAATTATCAAACTAATGTTCGACCGGAGCCTCTTCGGGGAGGGATATTTGCGGATGGGATGGGATTAGGGAAGACGTTAACGTTGCTATCGTTGATTGGTTATGATAAAATGAAAATGAAAAGTGGGAAGAAACGAGGTAGGAGTAGTGTAGAGAGGGTGGAGAGTGAGACAAATGGTACATTGATTGTGTGTCCTCCTTCTGTGATTTCGACGTGGATAACTCAATTGGAGGAACATACTAACCGCGGCACGTTGAAGGTTTATATGTATTATGGTGATAGGAGGACTCAAGATGCTGAGGAGTTGAGGAAGTATGATATTGTGTTGACTACTTATGCTACATTGGGAACTGAGTTGCGGTGTTCGGATACTCCTGTGAAGAAATTGGGGTGGAGGAGGATTGTTTTGGATGAAGCGCATACGATTAAGAATGTTAATGCTGGACAGAGTCAGGCTGTTATTGCTTTGAATGCTAAGAGGAGATGGGCTGTTACGGGGACGCCTATTCAGAATGGTTCTTATGATTTGTTCTCTCTTATGGCGTTTTTGCATTTTGAACCGTTTTCTATTAAGAGTTATTGGCAAAGCTTGGTTCAGCGACCTCTTAATCAAGGAAAACAGACGGGGATGAGTCGATTGCAGGTTTTGATGTCGGCAATATCATTGCGAAGAACCAAAGATACTGCATTGGTGGGGCTTCCACCTAAGATTGTTGAGACTTGTTATGTTGAACTTTCATTTGACGAACGTAAACTGTATGATGAGGTTAAAGAGGAAATAAAGTCGCTTATGATGCATCATAACAGCAATGACAGACTGGTATCTAGTTATTCCACTATACTAAGTATGATTCTAAGACTTCGTCAGATCTGTGCTGATTTTTCGATGGTTCCTTTGGATTTCAAGTCGTGTCTATTTTCTTCAACTGATATTGAAGATGTTTCCAAGAACCCTGAATTGCTGCAAACATTAATTAGGATGCTACAAGATGGTGAAGATTTTGATTGTCCAATTTGTTTATCTCCCCCAACAGATATTGTAATTACATGCTGTGCTCATATTTTCTGCCGAGAATGTATTCTGAAAACTCTTCACCGCAGCAATTCCAGTTGTCCACTTTGTCGGCGCTCCCTCTCAGAATCTGAGTTATTCTCAGCTCCCCCTGAATCTTTCAAGACTGATGATACTGATGATCCTACTGAGCTGTGCACACCAGAAGTGAGGTCATCTACCAAAGTCGCTACTTTGATAAAGCTTCTTACAGAATCAAGGGATCAAAATCCAGCTACAAAATCAGTTGTATTTTCACAATTCCGTAAGATGCTGCTGTTGTTAGAAGAACCTTTGAAAGCAGCTGGCTTTAAAACATTGCGTCTTGACGGGACAATGAATGCCAAACAAAGGGCTCAAGTTATTGAACAATTTCAACTCTCAGAAGTTGATGAGCCAATGATTCTGCTTGCAAGTCTCAGAGCTTCAAGTACAGGAATAAATCTTACTGCTGCCTCCAGAGTGTACTTAATGGAGCCATGGTGGAACCCTGCCGTTGAAGAACAAGCAATGGATCGTGTCCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATTGCAAAAAACAGCATTGAAGAGAAAATACTTATGTTGCAAGAGAAGAAGAAAACAATAACAAGCCGAGGATCTGGGAGAAGATCAAAGGATATCGCTGGCATGGGCATAGAGGATCTCCGTTTTGTTTTAGGAGAATAG 2475 0.4299 MEDSQEPFSQSQSQSETYLAGFVMANIVGIKHYSGTITGREILGLIREPLNPYDSNAIKVLNTQSLQVGHIERAVAAALAPLLDAHIIHVEAIVQTRSNNNKFRIPCQIHIFAHQSAFDAVHDAFNGSNVHFISYTDPSFTLSHSAAVKETRADTVSANSATVTNSGNSKNLDQIFKLLRENLASKTLVSEPLNPPSSIIKSELLQHQKEALGWLYHRESTDDLPPFWEEKEGNFVNVLTNYQTNVRPEPLRGGIFADGMGLGKTLTLLSLIGYDKMKMKSGKKRGRSSVERVESETNGTLIVCPPSVISTWITQLEEHTNRGTLKVYMYYGDRRTQDAEELRKYDIVLTTYATLGTELRCSDTPVKKLGWRRIVLDEAHTIKNVNAGQSQAVIALNAKRRWAVTGTPIQNGSYDLFSLMAFLHFEPFSIKSYWQSLVQRPLNQGKQTGMSRLQVLMSAISLRRTKDTALVGLPPKIVETCYVELSFDERKLYDEVKEEIKSLMMHHNSNDRLVSSYSTILSMILRLRQICADFSMVPLDFKSCLFSSTDIEDVSKNPELLQTLIRMLQDGEDFDCPICLSPPTDIVITCCAHIFCRECILKTLHRSNSSCPLCRRSLSESELFSAPPESFKTDDTDDPTELCTPEVRSSTKVATLIKLLTESRDQNPATKSVVFSQFRKMLLLLEEPLKAAGFKTLRLDGTMNAKQRAQVIEQFQLSEVDEPMILLASLRASSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILMLQEKKKTITSRGSGRRSKDIAGMGIEDLRFVLGE 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02726 824 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 560 625 IPR013083 -
Mepo3g02726 824 CDD SF2_C_SNF 650 779 - -
Mepo3g02726 824 ProSitePatterns Zinc finger RING-type signature. 591 600 IPR017907 -
Mepo3g02726 824 SMART ultradead3 200 433 IPR014001 -
Mepo3g02726 824 Gene3D - 474 818 IPR027417 -
Mepo3g02726 824 SMART HIRAN_2 20 115 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mepo3g02726 824 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 245 426 IPR014001 -
Mepo3g02726 824 Gene3D - 10 131 - -
Mepo3g02726 824 Gene3D - 236 465 IPR038718 -
Mepo3g02726 824 Pfam Helicase conserved C-terminal domain 652 768 IPR001650 -
Mepo3g02726 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 823 IPR027417 -
Mepo3g02726 824 Pfam SNF2-related domain 207 536 IPR000330 GO:0005524|GO:0140658
Mepo3g02726 824 SUPERFAMILY RING/U-box 561 621 - -
Mepo3g02726 824 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 655 819 IPR001650 -
Mepo3g02726 824 SMART helicmild6 683 768 IPR001650 -
Mepo3g02726 824 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 131 821 - -
Mepo3g02726 824 Pfam HIRAN domain 23 112 IPR014905 GO:0003676|GO:0008270|GO:0016818
Mepo3g02726 824 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 464 IPR027417 -
Mepo3g02726 824 ProSiteProfiles Zinc finger RING-type profile. 576 615 IPR001841 -
Mepo3g02726 824 SMART ring_2 576 614 IPR001841 -
Mepo3g02726 824 CDD RING-HC_HLTF 571 623 - -
Mepo3g02726 824 Pfam Zinc finger, C3HC4 type (RING finger) 573 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02726 Mepo-Chr3 37170619 37175866 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02726 6 818 RAD5 or RAD16-like Gene Family AT5G05130 58.499 0.0 976
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo3g02726 SNF2_N 2.5e-76 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02726 K15711 - cave:132162077 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02726 3 37170619 37175866 Mepo3g02726 3 37170619 37175866 ECH