Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02619 ATGGGAAGACCTCCTTGTTGTGAAAAAGTTGGCATCAAGAAAGGTCCATGGACACCTGAAGAAGATATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGAACAGTTCCTACTAATACAGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGGAATCAAGAGAGGAAACTTCACTCCTCATGAAGAAGGAATGATTATTCATTTGCAAGCTCTTCTTGGTAACAAATGGGCAGCCATAGCTTCATACCTTCCTCAAAGAACAGATAATGATATAAAGAATTATTGGAACACACATCTAAAGAAAAAGCTCAACAAATTTCATGCAGCTTTAGATCCATCAAACTCAACATCAACAACCTATCTATCCAAGAGTTTTAGTGACAGAAGTTTAGATATCAACAACAATCATACTTCATCTCTTAAGATTAATACTCAAAATTCTCATCAATCTTCTTCTTCAACCTATGCTTCAAGCACTGAGAATATTTCAAGGCTCTTAGAAGGTTGGATGAGATCTTCTCCAAATTCACAAATCAAAGGAAATTATCAATATGGTCATCAAGAGTTTCAAAGCATTAATGATGATATTATTGATGATAATAATGAGTTTGAAAATGATGGGAAATTATTAGTGAAGTCTGCTTCAGTTCCAGCTGATTTAAACCTTGAAATCCATCATCATCATCATCACAAAATTACCACCAAAGGTGAATTATTACAAGATGGTGGAGTTTCACATGATCAAGAGTTTGATTCTATTCTTTCATTTGAGAATCTTAACAATGGTGCTGCTTGGGACAAGTCAACTTGTGATTCTATGCCTGAAAAGTGTTCAGCTTCTTCTTCTTCTTCTCATCACAAGAATATTAAGAATTTATGTGCAGCTCCTCCTCCTTTGTCATTTCTTGAGAAATGGTTATTGGATGAAAATGTTGGTCATGTGGAGGAAATGATGGAATTATCTCCGATGTTCTAA 1014 0.359 MGRPPCCEKVGIKKGPWTPEEDIILVSYIQEHGPGNWRTVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLNKFHAALDPSNSTSTTYLSKSFSDRSLDINNNHTSSLKINTQNSHQSSSSTYASSTENISRLLEGWMRSSPNSQIKGNYQYGHQEFQSINDDIIDDNNEFENDGKLLVKSASVPADLNLEIHHHHHHKITTKGELLQDGGVSHDQEFDSILSFENLNNGAAWDKSTCDSMPEKCSASSSSSHHKNIKNLCAAPPPLSFLEKWLLDENVGHVEEMMELSPMF 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02619 337 CDD SANT 69 112 IPR001005 -
Mepo3g02619 337 Gene3D - 13 66 - -
Mepo3g02619 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Mepo3g02619 337 Gene3D - 68 174 - -
Mepo3g02619 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Mepo3g02619 337 CDD SANT 16 61 IPR001005 -
Mepo3g02619 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 214 - -
Mepo3g02619 337 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo3g02619 337 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo3g02619 337 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo3g02619 337 SMART sant 13 63 IPR001005 -
Mepo3g02619 337 SMART sant 66 114 IPR001005 -
Mepo3g02619 337 MobiDBLite consensus disorder prediction 149 169 - -
Mepo3g02619 337 FunFam MYB-related transcription factor 13 66 - -
Mepo3g02619 337 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mepo3g02619 337 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02619 Mepo-Chr3 36154796 36156690 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02619 1 127 MYB Transcription Factor Family AT5G62470 84.252 5.01e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g02619 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02619 K09422 - gmx:100802204 427.172