Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02594 ATGGTTTACTGCGATCATTGCGTCAAAAACGTTCGCGCAGAGCTGCACGAAGAATGTTACTTGGTTTGTACATCTTGTGGGAAGGTGTTGGAAGATCAGATTTTAACTGAGGAGCCTACTTTTACTAAAAACTCCGCCGGACAGAGCAAAATATCGGGAAATTTGATAAAAGCGGTTGAGGAGTTAGATGCTTCACGTAAAAGGACTTTATATAGAGCTTCTAAAGAAATGGAATATTTAAGTCTCAGCCTTGGAGTAAGTGAGGGAGATGTGGTCCGCCAAGCTAGGGCCTTCTATGAAATAGCACTTGCAAAAAATTTCACCCGAGGACGTAAATCAGAGCAAGTACGGGCTGCGTGTCTTTATCTTGCATTCCGGCAAAATAAAAAGCCATACTTTCTTATTGAATTTTCAAACAATTTAAGGATAAATGTTTATGAGCTTGGAGGAGTTTATTTGCAGCTTTGTGAAGTGTTAAGGCTTGACAATCATCCAATTGTTAAAAAGCCTATTGATCCTTCTCTTTATCTTCATAAATATACTAGTAATTTGCTTGGGCATAGAAATGGGGTTGTCTCTGCAACTGCACTGAACATTATTGCGCAAATGAACCGTGACTGGTTGCAGACAGGGAGGAAACCTGGTGGATTATTTGCTGCTGCATTATACACCTCTGCTAATGCACATGGTCATAAAGTCTCCAAGCGAGATATTCTAAGACTCTTCCATATATGCGAGCAAACGATGAATAAGCGATTGATAGAATATGAGATGACAGACTCTTCTAACTTGACAGTTGATGAATTGAATGCAATGGCAAAAGAGCATGAAAAAAATCCCGTTGTTATGCCAAACAGTAAATTCAATGGATCTACTTCAACCCCACTAGTGTGTGAACATAAAGAAATGGAAGTGCCCCATTTTGCACTTGGACTATGTGAAACTTGTTATAAGGATTTTGATACGGTCTCGGGAGGATTTGGTGGTGGTTTGGACCCTCCTGCATTCCAGCGAGCTGAACAGGAGAGAGTCAAGAAAACAAATTCTAAGGAAAATTCAGATGTGGTGAAGGCATCAAATAACGCATGCAAGGGACAGAAAGAAGATTTTCCTGCCTCTGTGTTAGAAAGGGATGACACTAGTACGGAAGCTCAAGATGAATCAGGAAATTTCTCTGATATTGATGACCAAGAGGTTGATGCATTCCTTTTCAATGAGGAAGAGAAGCCTTACAGGAAGATAATATGGGAAAATCAGAACCGCGAGTATCTTGAGGAGCAAGCAGCCAAGGAAGCAGCTGCAGCAGCTCAGAAGAAAATTTATGAAGCAAATTTGGAAAATTGTCCAGTAGAATCAAGAGAGCTTTATGAATCTACCACAGCTTCTGTGGCAAAAACAAGAAAGGAAAAGCAGAGACAAGCTCAACAAGCAAAAAAATCAGGGCCTGCTCAATCTGCTGCAGAGGCTGCTTGCCAAATGGTGAAAAGAAAGGGGCTCAGTAACAAAGTCAATATGGATAACTTTGCAAAATTATTTGAAGACAAACCAGCAGATGAACGTAATCCCAAGAAAGTACGATTTGATCTAGCTTCTGATAATCACGATGATGAACTGGGATCAGCGGATTATTTTGAGGATGGTGTCAATGATTGGTATAATAATGAAAATATGGATGAATCATATTTCCCTGAAGAAGATGGTTATAATTATGATGAGGGTTATTACTGA 1728 0.3987 MVYCDHCVKNVRAELHEECYLVCTSCGKVLEDQILTEEPTFTKNSAGQSKISGNLIKAVEELDASRKRTLYRASKEMEYLSLSLGVSEGDVVRQARAFYEIALAKNFTRGRKSEQVRAACLYLAFRQNKKPYFLIEFSNNLRINVYELGGVYLQLCEVLRLDNHPIVKKPIDPSLYLHKYTSNLLGHRNGVVSATALNIIAQMNRDWLQTGRKPGGLFAAALYTSANAHGHKVSKRDILRLFHICEQTMNKRLIEYEMTDSSNLTVDELNAMAKEHEKNPVVMPNSKFNGSTSTPLVCEHKEMEVPHFALGLCETCYKDFDTVSGGFGGGLDPPAFQRAEQERVKKTNSKENSDVVKASNNACKGQKEDFPASVLERDDTSTEAQDESGNFSDIDDQEVDAFLFNEEEKPYRKIIWENQNREYLEEQAAKEAAAAAQKKIYEANLENCPVESRELYESTTASVAKTRKEKQRQAQQAKKSGPAQSAAEAACQMVKRKGLSNKVNMDNFAKLFEDKPADERNPKKVRFDLASDNHDDELGSADYFEDGVNDWYNNENMDESYFPEEDGYNYDEGYY 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02594 575 SUPERFAMILY Cyclin-like 74 162 IPR036915 -
Mepo3g02594 575 Gene3D - 172 263 - -
Mepo3g02594 575 PRINTS Transcription initiation factor IIB signature 118 137 IPR000812 GO:0006352|GO:0070897
Mepo3g02594 575 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Mepo3g02594 575 PRINTS Transcription initiation factor IIB signature 212 228 IPR000812 GO:0006352|GO:0070897
Mepo3g02594 575 Pfam Transcription factor TFIIB repeat 169 255 IPR013150 GO:0017025
Mepo3g02594 575 Pfam Transcription factor TFIIB repeat 67 156 IPR013150 GO:0017025
Mepo3g02594 575 Pfam Brf1-like TBP-binding domain 392 513 IPR011665 -
Mepo3g02594 575 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 502 IPR000812 GO:0006352|GO:0070897
Mepo3g02594 575 CDD CYCLIN_TFIIIB90_rpt2 169 259 - -
Mepo3g02594 575 MobiDBLite consensus disorder prediction 519 541 - -
Mepo3g02594 575 SUPERFAMILY Zinc beta-ribbon 2 46 - -
Mepo3g02594 575 MobiDBLite consensus disorder prediction 554 575 - -
Mepo3g02594 575 FunFam Transcription factor IIIB 90 kDa subunit 62 165 - -
Mepo3g02594 575 SUPERFAMILY Cyclin-like 171 256 IPR036915 -
Mepo3g02594 575 Gene3D Single helix bin 371 434 - -
Mepo3g02594 575 MobiDBLite consensus disorder prediction 340 392 - -
Mepo3g02594 575 MobiDBLite consensus disorder prediction 370 384 - -
Mepo3g02594 575 FunFam Transcription factor IIIB subunit 172 261 - -
Mepo3g02594 575 MobiDBLite consensus disorder prediction 461 489 - -
Mepo3g02594 575 Gene3D - 63 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02594 Mepo-Chr3 35931750 35944114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02594 1 497 Inorganic Solute Cotransporters AT2G01280 38.372 3.59e-95 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02594 K15196 - gmx:100817609 584.334