Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02544 ATGCAGAATCAGAAAGCAGGAATTTCAGTAACCAACAAAGGAGGAAAATTCAAAGGAAGAAATAGAAACAGCAACAACACAAACAAGTTTGTTGGTGTTAGGCAAAGGCCATCAGGTAGATGGGTAGCTGAGATCAAAGACACCACTCAGAAGATAAGAATGTGGCTTGGAACATTTGAGACAGCTGAGGAAGCAGCTAGAGCTTATGATGAAGCTGCATGCCTTCTTCGAGGTTCGAACACTCGAACCAACTTCATCACTCATGTCTCATTGGATTCTCCTCTTGCTTCTAGGATAAGAAATCTTCTTAACAACAGAAAAGGCGACAAAAAACAGGAAGATGGCGTTGTTGCTTCTGCTCCAAGTAACAGCAAAACTACCATTAGTAATACTACAATTACAAGCAATAATGATAGCAAGGAGAACACTCTTTCAACTTGTGCTACTCAAAATACAGAACTGTTTGAGGATGCTTATAAACCAGATTTGAGCAATTGCAAGGAAGTTTTTGAGTCAGGTTCACAATCCAACATTTCATGTGGTTTTGGACCTTTCTTTGATCATTTTTCTTTCACTCAATTATTGGATATGGCGAAGAATGATGACATAACCGATGCATCTAGCTTGGAGCTTTCAGAATTTGAAAGAATGAAGGTTGAAAGACAGATATCAGCTTCACTTTATGCTATTAATGGAGTGCATGAGTACATGGAAACTGTTCAAGAGTCTAATGAAGCTTTATGGGATCTTCCACCTTTGTGCTCTTTGTTCTGTTAA 777 0.3874 MQNQKAGISVTNKGGKFKGRNRNSNNTNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNRKGDKKQEDGVVASAPSNSKTTISNTTITSNNDSKENTLSTCATQNTELFEDAYKPDLSNCKEVFESGSQSNISCGFGPFFDHFSFTQLLDMAKNDDITDASSLELSEFERMKVERQISASLYAINGVHEYMETVQESNEALWDLPPLCSLFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02544 258 MobiDBLite consensus disorder prediction 1 31 - -
Mepo3g02544 258 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Mepo3g02544 258 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Mepo3g02544 258 FunFam ethylene-responsive transcription factor RAP2-11 28 87 - -
Mepo3g02544 258 Pfam AP2 domain 29 78 IPR001471 GO:0003700|GO:0006355
Mepo3g02544 258 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 224 - -
Mepo3g02544 258 CDD AP2 29 85 IPR001471 GO:0003700|GO:0006355
Mepo3g02544 258 MobiDBLite consensus disorder prediction 106 138 - -
Mepo3g02544 258 SUPERFAMILY DNA-binding domain 29 86 IPR016177 GO:0003677
Mepo3g02544 258 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Mepo3g02544 258 MobiDBLite consensus disorder prediction 117 138 - -
Mepo3g02544 258 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Mepo3g02544 258 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02544 Mepo-Chr3 35483543 35484330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02544 16 258 AP2-EREBP Transcription Factor Family AT5G19790 42.636 3.46e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g02544 AP2 5.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02544 K09286 - gmx:100796898 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02544 3 35483543 35484330 Mepo3g02544 3 35483543 35484330 ECH
Mepo3g02544 3 35483543 35484330 Mepo7g00203 7 4424475 4425377 PCT