Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02521 ATGGATGTGTGCCAAAATGTACAAGTTTCTAGTGAGTGCAAACAAGAGAAGGTTCTTAACCCTTCTTGCTCTAACCTTTCAAGTAGTCTTGATGACCTCTTTTCTGCTCAAAACATGGAAGTGGATGTTGGAATGGAATGGCTTTCAGTGTTTGTTGAAGATTGTTTCTCAAGCCCACAAAGTTGTGTACTTTTACCCTCAAGTATTCAAAACACAACAAGTACTGTCTCATCAAAACCTTCAAACACAGTGAAGAAACCAAAGCAAGAACAAAATGAGTCACCTTTTGCAGTTCCAGGCAAAGCAAGAAGCAAAAGGAAGAGACTTTCAGCTCCAAGAAGACCAAAAGACCCTTTAAGCATCTTATCCAACACCTTAAACCCTCAAAATGAGTCACTATGTTCTGACCCACCTCTCTTAAAACAAACTTATTGGTTAGCTGATAGTGAACTCATGGTACCTAAGTGTGAAAAAGAGGTAACTCAAGATTGTGAAGTAGTTGAAAAGGAAATTGTTAAAAAGGAAAGGTTTGATTTTGAGGGGTTTGAGGTTGATGTTAACAATGGTCAAAATCCAATTCCAACAAGGAGGTGTACACATTGTTTGTCACAAAGGACCCCACAATGGAGGGCAGGCCCATTAGGCCCAAAGACACTATGCAATGCATGTGGTGTGAGGTACAAATCTGGTAGGTTGTTGCCAGAGTATAGACCTGCCAAGAGTCCAACTTTTGTGAGCTTTTTGCATTCAAATTCACACAAGAAAGTCATGGAGATGAGGATGAATGTTGTATCTTCCATTAATCCTAGTGAGTAG 816 0.3983 MDVCQNVQVSSECKQEKVLNPSCSNLSSSLDDLFSAQNMEVDVGMEWLSVFVEDCFSSPQSCVLLPSSIQNTTSTVSSKPSNTVKKPKQEQNESPFAVPGKARSKRKRLSAPRRPKDPLSILSNTLNPQNESLCSDPPLLKQTYWLADSELMVPKCEKEVTQDCEVVEKEIVKKERFDFEGFEVDVNNGQNPIPTRRCTHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSFLHSNSHKKVMEMRMNVVSSINPSE 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02521 271 ProSiteProfiles GATA-type zinc finger domain profile. 192 228 IPR000679 GO:0006355|GO:0043565
Mepo3g02521 271 MobiDBLite consensus disorder prediction 72 127 - -
Mepo3g02521 271 MobiDBLite consensus disorder prediction 72 90 - -
Mepo3g02521 271 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
Mepo3g02521 271 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Mepo3g02521 271 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Mepo3g02521 271 PANTHER GATA TRANSCRIPTION FACTOR 24 266 - -
Mepo3g02521 271 FunFam GATA transcription factor 188 269 - -
Mepo3g02521 271 Gene3D - 191 261 IPR013088 GO:0006355|GO:0008270
Mepo3g02521 271 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Mepo3g02521 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 195 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02521 Mepo-Chr3 35302247 35303607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02521 45 260 C2C2-Gata Transcription Factor Family AT4G32890 43.694 3.38e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo3g02521 GATA 1.8e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02521 - - gmx:100786479 362.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02521 3 35302247 35303607 Mepo3g02521 3 35302247 35303607 ECH
Mepo3g02521 3 35302247 35303607 Mepo7g00221 7 4644397 4646223 PCT