Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02436 ATGGAGAGATACACGCTACCCTTACCACCTCAACAAGTTCACAACACTCTCACTATACCTTGGACTGAACCACAACAACAAGAATCTCCTTCTTCATGGTCCACACCTAACTCCGAACCTAAACACAACGAACAAGACATTGCAATAGCTATTGCCATGGCTGGTTCTTCTCTCCCTTTCTTCAAACCCGAACCTGATAACAACAACAACAACTTCTACAACAACAACAACAACAACGTTGTTAATGTTAATAATGTTATTCCCTTGCCGGATAATTTTCTCATGCACCAAAACACAAACACCATAGATTCAATTTCAAATCCACACTCTTTCTTCCACAACAATAGCAACTACTTCTTCAACAACAATAATACCAATAACCCATTTGAAATGGGGTTTGAAAATGGATTCTTTATGGGAAATAACAACACTTCAACTTCCCCTGTTTTCATGGGTGGGTCCCTTTCAGCTTCTGAGTTTCCTCCGAGTCTTGAACTCGATGCTGCTCCAGTACCACCTTTCAGTGCTTCGTTTTCTATGCCTCTTGAGCTAGCTCAACCTCAACAACAACAACAACATCATCAACATCAACAACAACCCACGACGCTGTTTCAGAAGCGTCGTGGGGCGTTGGAGATTCCAAGGTTGGAGACTGTTGGGAACAAGAAGAAGAGGAAGGTGGAGAAGAGTTGGGAAGAAGAAGGAAGCGGTGGTGGTGGTGGTGATGATGTTGATGATTTTTCTGAGTTGAATTATGATTCTGATGAGAATGGGAATGATTTGAATAATTCCAATGGGACTGTTGTTACTGGTGGAGATCAAAAGGGGAAGAAGAAGAAGGGGCTTCCGGCGAAGAATTTGATGGCTGAGAGGCGCCGGAGGAAGAAACTCAATGATAGGTTGTACATGCTTAGGTCTGTTGTGCCTAAGATTAGCAAGATGGACAGGGCTTCAATACTCGGAGATGCAGTTGACTACTTGAAGGAGCTGCTGCAGCGGATTAATAATCTTCACAACGAACTGGAATCAACTCCACCTGGCTCATTGCTGCAACCATCTGCAAGTGCAAGCTTTCACCCGTTGACACCAACTCCGCCGACCCTTCCCTGTCGAGTCAAGGAGGATCTATATCCTGGTGACTTGCTAAGCCCCAAAAACCAATCTCCCAAGGTGGAAGTTAGGGTAAGGGAAGGGAGAGCCGTCAACATTCATATGTTTTGTACTCGCAGACCAGGACTTTTGTTATCTACCATGAGGGCTTTGGATAACCTTGGATTAGATGTTCAGCAGGCTGTTATCAGTTGTTTCAATGGCTTTGCATTAGATGTGTTCAGAGCCGAGCAGCAATGCAGAGAAGGCCAGGATGTACTCCCCGAGCAAATTAAAGCAGTGCTGTTGGATTCAGCGGGCTACAATGGTTTGAACTGA 1428 0.4461 MERYTLPLPPQQVHNTLTIPWTEPQQQESPSSWSTPNSEPKHNEQDIAIAIAMAGSSLPFFKPEPDNNNNNFYNNNNNNVVNVNNVIPLPDNFLMHQNTNTIDSISNPHSFFHNNSNYFFNNNNTNNPFEMGFENGFFMGNNNTSTSPVFMGGSLSASEFPPSLELDAAPVPPFSASFSMPLELAQPQQQQQHHQHQQQPTTLFQKRRGALEIPRLETVGNKKKRKVEKSWEEEGSGGGGGDDVDDFSELNYDSDENGNDLNNSNGTVVTGGDQKGKKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVDYLKELLQRINNLHNELESTPPGSLLQPSASASFHPLTPTPPTLPCRVKEDLYPGDLLSPKNQSPKVEVRVREGRAVNIHMFCTRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAEQQCREGQDVLPEQIKAVLLDSAGYNGLN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02436 475 CDD bHLH_AtAMS_like 284 348 - -
Mepo3g02436 475 MobiDBLite consensus disorder prediction 210 236 - -
Mepo3g02436 475 MobiDBLite consensus disorder prediction 1 42 - -
Mepo3g02436 475 Gene3D - 273 344 IPR036638 GO:0046983
Mepo3g02436 475 MobiDBLite consensus disorder prediction 184 283 - -
Mepo3g02436 475 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 281 330 IPR011598 GO:0046983
Mepo3g02436 475 MobiDBLite consensus disorder prediction 9 42 - -
Mepo3g02436 475 MobiDBLite consensus disorder prediction 254 271 - -
Mepo3g02436 475 FunFam BHLH transcription factor 277 345 - -
Mepo3g02436 475 SMART finulus 287 336 IPR011598 GO:0046983
Mepo3g02436 475 Coils Coil 324 344 - -
Mepo3g02436 475 MobiDBLite consensus disorder prediction 184 205 - -
Mepo3g02436 475 Pfam Helix-loop-helix DNA-binding domain 288 330 IPR011598 GO:0046983
Mepo3g02436 475 CDD ACT_UUR-ACR-like 403 464 - -
Mepo3g02436 475 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 187 472 - -
Mepo3g02436 475 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 350 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02436 Mepo-Chr3 34350931 34353984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02436 123 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 56.342 1.33e-100 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g02436 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02436 - - psat:127126761 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02436 3 34350931 34353984 Mepo3g02436 3 34350931 34353984 ECH