Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02428 ATGATGATGGATGAGGGAGAAGGTAAGAAGAAAGTTGTGGTTCAGAAAACCGAGGCGTGTGGTTTCATGGCAGGTGTTGAAGATGAGCTAGGGTTTGTCAACGTGAAAGGAGACAACAACAGCAAGATTAACGGGTCGGGTCAACGGATCCATCATGATCACGGTTTTGTTGCTGCTGCATTTGGAACTGTTCATAGGAAGAAAAGGATGGCTAGGCAAAGAAGATCTTCATCTTCAACCATCACTATTCATCTCAAAAATCTTCCTTCTTCTACTACTACTACCTCGCACGTGCCAATCTCTCCAATTCCACCTCTTTTTCATTCTCTCCCTCCCGCACGTGAAATCGATCATAGGAGGTTGAGATTCCTTTTTCAAAAGGAGTTGAAGAACAGTGATGTTAGCTCCCTTAGGAGAATGGTGTTGCCTAAGAAAGCAGCAGAGGCTTTCCTTCCAGTCCTTGAGTCAAAGGAAGGAATTCTTCTCAGCATGGATGATATAGATGGTCTTCATGTATGGAGTTTCAAGTACAGGTTTTGGCCTAACAATAACAGTCGGATGTATGTACTTGAAAACACTGGAGACTTTGTTAGCACACATGGTCTACGCTTTGGAGACTCCATTATGGTTTACCAAGATAATCACAATCACAATTATGTAATTCAGGCAAAGAAAGCTTGTGATCAAGATGAGTATATGGAAGAAGCTAATGATACAATCAATCATATCTTTGTTGATGATTATGAGGTGAACAAAAGTTGCTTTGATGTAGCCTATCCTGCAATGAATGATACAAGCATGTCATTTATATATGACACAACCATCTCAAATGACTCACCACTTGATTTTTTGGGTGGATCAATGACCAATTACTCAAGAATTGGATCAGTTGAAACATTTGGCTCTGTTGAGAATCTGTCACTTGATGACTTCTATTGA 939 0.4047 MMMDEGEGKKKVVVQKTEACGFMAGVEDELGFVNVKGDNNSKINGSGQRIHHDHGFVAAAFGTVHRKKRMARQRRSSSSTITIHLKNLPSSTTTTSHVPISPIPPLFHSLPPAREIDHRRLRFLFQKELKNSDVSSLRRMVLPKKAAEAFLPVLESKEGILLSMDDIDGLHVWSFKYRFWPNNNSRMYVLENTGDFVSTHGLRFGDSIMVYQDNHNHNYVIQAKKACDQDEYMEEANDTINHIFVDDYEVNKSCFDVAYPAMNDTSMSFIYDTTISNDSPLDFLGGSMTNYSRIGSVETFGSVENLSLDDFY 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02428 312 CDD B3_DNA 123 225 IPR003340 GO:0003677
Mepo3g02428 312 Pfam B3 DNA binding domain 125 221 IPR003340 GO:0003677
Mepo3g02428 312 SMART B3_2 125 227 IPR003340 GO:0003677
Mepo3g02428 312 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Mepo3g02428 312 Gene3D - 121 241 IPR015300 -
Mepo3g02428 312 SUPERFAMILY DNA-binding pseudobarrel domain 123 227 IPR015300 -
Mepo3g02428 312 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 64 233 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02428 Mepo-Chr3 34261163 34264808 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02428 1 312 B3 DNA Binding Superfamily AT3G26790 47.564 2.29e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo3g02428 B3 4.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02428 K09287 - gmx:100783961 428.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02428 3 34261163 34264808 Mepo3g02428 3 34261163 34264808 ECH