Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02411 ATGGCAGACCCTTCAGCCATTTATGAGTTTCTCATGAAACAACAAACTTCATCATCACCACCAAGAAGATCATCACAGCCTTCAACAACAAGAACTTTTCAGTGTCAATATTGTCACCGTAAGTTCTACACTTCTCAAGCTCTTGGTGGCCACCAAAATGCTCACAAACTTGAAAGAGCTGCTGCTAGATCAAAAACCATCAACCTCAACACCACCACCAACAACAACGTTGTTCCTTTTTCACAACCACATGTTTCTGAACAACATGAACAAGGTGGTTTCTTTCATCATTACCCTTATTGGCAACAACAAATGGAATCTATACAGTTTCAAACACCACAACATCATGTTCAAGCAGCAACAAACACTTTTCCTCCCATGCTTCCTTGCAATGGTTATGCTTTTGCTGCTTCATCTTCCACTCCTCACTATGCTGCTTCTGCTTCAGCTTCTGTTTCTCCTCAGTTTGTTGATGCTTCTGACCATGTCAATCTTGACCTCACTCTTCATCTCTGA 516 0.4147 MADPSAIYEFLMKQQTSSSPPRRSSQPSTTRTFQCQYCHRKFYTSQALGGHQNAHKLERAAARSKTINLNTTTNNNVVPFSQPHVSEQHEQGGFFHHYPYWQQQMESIQFQTPQHHVQAATNTFPPMLPCNGYAFAASSSTPHYAASASASVSPQFVDASDHVNLDLTLHL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02411 171 Gene3D Classic Zinc Finger 11 90 - -
Mepo3g02411 171 ProSitePatterns Zinc finger C2H2 type domain signature. 35 55 IPR013087 -
Mepo3g02411 171 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 133 IPR044246 GO:0009788
Mepo3g02411 171 SUPERFAMILY beta-beta-alpha zinc fingers 30 60 IPR036236 -
Mepo3g02411 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 33 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02411 Mepo-Chr3 33999521 34000036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02411 25 78 C2H2 Transcription Factor Family AT5G14010 61.111 1.80e-15 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g02411 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02411 - - mtr:11440030 263.077