Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02399 ATGGATGATCAAATTGAGTCATATTCTCCTAATACATTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTGTGGCACCTTGAAGTATGCACATCGAATATGTGTTCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAACTTAAAGGCTATACTGCTCCTCCACCAGCTCCTCTATTCCGCTATGGGGGCAACTGGGAAATTCCAAATATCGGCTTAAATAATCATCGATTCATAGCACTGTTTCCTACTGATCGTGAATTCCTAGACCTTGACTTTGAATATTCAGCACCCTCTACAAGGAGCCTAATGTTCTTCCGCATTGTTACTGTTATTTTTGTTGTTCTGCTTGTTTTACGTCATACACTACCAATCATACTTATGCTCAATGGAGTAGGAGAGTATTCTCTGACAGTGTTTATGCTGCTAGTGTGGGGAATCATTGGATTAATTATACCAGTGTATATGATGGTAAAAGCTCTTGGTGCTATCCAAGTCCAACAACTTCAACACCAGGATCATAATTCCCTTATGCAATCACGTGAGGAAAATGACATGGGGCAGTCTCAATTGCGTGTCATCCATATTCAGTGA 645 0.4 MDDQIESYSPNTLVQCRICHDEDEDLNMDTPCSCCGTLKYAHRICVQRWCNEKGDTTCEICQQQLKGYTAPPPAPLFRYGGNWEIPNIGLNNHRFIALFPTDREFLDLDFEYSAPSTRSLMFFRIVTVIFVVLLVLRHTLPIILMLNGVGEYSLTVFMLLVWGIIGLIIPVYMMVKALGAIQVQQLQHQDHNSLMQSREENDMGQSQLRVIHIQ 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02399 214 SMART ringv_2 15 62 IPR011016 GO:0008270
Mepo3g02399 214 CDD RING_CH-C4HC3_MARCH 16 62 - -
Mepo3g02399 214 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Mepo3g02399 214 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Mepo3g02399 214 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 6 187 IPR033275 -
Mepo3g02399 214 SUPERFAMILY RING/U-box 13 65 - -
Mepo3g02399 214 Pfam Protein of unknown function (DUF3675) 67 177 IPR022143 -
Mepo3g02399 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 71 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02399 Mepo-Chr3 33855977 33858483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02399 1 63 C3H Transcription Factor Family AT2G37950 39.394 5.63e-07 46.6