Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02388 ATGGCTAGGAACAAAGCTAAGTCTGATCCATCGAAGCCGAAGAGGCCACAGTCTCCTTTCTTTCTTTTCATGTCTGACTTCAGAGTGAGGTTCAAGAAGGAAAATCCACACAATATATACGTCTCTGTGGTTGGTAAAGCTGCCGGTGAAAAATGGAAATCGATGTCTAATGCTGACAAGGCTCCTTACATTGCTAATGCAGAAAAGAAGAGAATGGAATATAAGAAGGCCATCAATGCCTACAATAAGAAGGTTGTGATGGCCTTCTATAATACTAATTTGGTTGCCGGAAAAAAATCCTCTAGTGGAAAAAGTTTTGTCAAGTCAAATTCTAGAGTTGATGATGATGATGATGACAGTGATGATGATGATGATGATGGCGACGACGATGAGGAGGAGGAGGATGATGATGTGTCTGGTGACCAAGGTACTGCTTATAATCCTGCATCAAGGACTAAGAAGGTAAAACAAATGGTCGGCACTTCCACCCAAGGTTGCCCGTCTGAGGTGTTGGAAATTTCTTCCTCCCCCCCAACTTCCTCTCCTAATGAGTCTTCGCTGTTGCCTGAAATCCAAGTCCAGTCGAAGCCTTTTGGTCCACAGGCGACTGCTACTCTGACTCAATCTTTTGATTCGAGACAGAAAGTTCTTCCGGCATTAGAAGTTCAGCCTTTGCCGATTTCTAATCCTGTCGTGTCCGCAAACCAACAAACAAATGTCTCTCCATCTGTAGATGTAGTCATGGAGGACCAAGTAGTCATTCCCGCAGAAATGGTCACCTCGGGAGGGGGTTTCCAGGATGTTCACCCTGATCAAGATCCAAGGGATGACCTACTTCACAAGGTTAAGCAAGCGTCTAATGGGAATACTGGCGACGCTGACCCCGCAGATGACTTGCTTTCTTTGCTGAATGACTCAAGTCCTACAGCTTCTCTGTTTGCTGGGCTTGATTCTAGTGACTTGGCCATGGAACTTTTCAAATAA 984 0.4492 MARNKAKSDPSKPKRPQSPFFLFMSDFRVRFKKENPHNIYVSVVGKAAGEKWKSMSNADKAPYIANAEKKRMEYKKAINAYNKKVVMAFYNTNLVAGKKSSSGKSFVKSNSRVDDDDDDSDDDDDDGDDDEEEEDDDVSGDQGTAYNPASRTKKVKQMVGTSTQGCPSEVLEISSSPPTSSPNESSLLPEIQVQSKPFGPQATATLTQSFDSRQKVLPALEVQPLPISNPVVSANQQTNVSPSVDVVMEDQVVIPAEMVTSGGGFQDVHPDQDPRDDLLHKVKQASNGNTGDADPADDLLSLLNDSSPTASLFAGLDSSDLAMELFK 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02388 327 MobiDBLite consensus disorder prediction 98 186 - -
Mepo3g02388 327 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 13 82 IPR009071 -
Mepo3g02388 327 MobiDBLite consensus disorder prediction 143 186 - -
Mepo3g02388 327 MobiDBLite consensus disorder prediction 261 300 - -
Mepo3g02388 327 CDD HMG-box_AtHMGB1-like 14 74 - -
Mepo3g02388 327 Gene3D High mobility group box domain 1 89 IPR036910 -
Mepo3g02388 327 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 124 IPR031061 -
Mepo3g02388 327 MobiDBLite consensus disorder prediction 115 140 - -
Mepo3g02388 327 SMART hmgende2 12 83 IPR009071 -
Mepo3g02388 327 Pfam HMG (high mobility group) box 13 82 IPR009071 -
Mepo3g02388 327 SUPERFAMILY HMG-box 4 84 IPR036910 -
Mepo3g02388 327 Coils Coil 64 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02388 Mepo-Chr3 33771884 33775221 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Mepo3g02388 HMG_box 2.1e-19 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02388 K25507 - gmx:100499992 118.242