Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02356 ATGGCTTCAACCACCAAAGACTCAGATTTGGAATATTTGGAACACATTCAACAATACCTTCTTTTTGATGATTCTAGCATGCTGAAATCTCATCAACCTTTTCCAAGCCCTAAAAGTGACAATGATTCAGACACAACTGTAGAGGCGCGTGAAGTAAGCACGCCTCCTGTATGGAAGCGGTACAAGGGAGTGAGGCGTAGGCCATGGGGGAAGTTCGCGGCAGAGATCAGAGATCCAAAAAAGAATGGTGCTAGAGTTTGGCTTGGAACTTATGTGACTGCGGAGGAAGCAGCTTTGGCTTACGACAAAGCTGCTTTCAAGATGCGTGGCCGAAAGGCCAAGCTTAATTTTCCCCACCTCATTGGCTCTGATGTGTCTACACCAGAGTCAGAGAGGGAGGTGATTTTGAAACGGGAATCACCTGAGCCTTCTTCTTCTTCATCGGAGGGAAGTTGTGAGTCATTGTCACCAGGGTCGAAGAGGAGGAGAGGCATGGTTGACCTACTTAACAAACTAGCCAAGAATAGATGCCAAGCTAAGGTGGTTGAAATTGAAACGGCCTCATCACAGGCAAATGATTTTGAACAATGGGTGAATGAGTTGAGTGATAGCTCTCTAATTTGGTGCTCTTAG 633 0.4613 MASTTKDSDLEYLEHIQQYLLFDDSSMLKSHQPFPSPKSDNDSDTTVEAREVSTPPVWKRYKGVRRRPWGKFAAEIRDPKKNGARVWLGTYVTAEEAALAYDKAAFKMRGRKAKLNFPHLIGSDVSTPESEREVILKRESPEPSSSSSEGSCESLSPGSKRRRGMVDLLNKLAKNRCQAKVVEIETASSQANDFEQWVNELSDSSLIWCS 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02356 210 CDD AP2 59 120 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 PRINTS Ethylene responsive element binding protein signature 100 120 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 PRINTS Ethylene responsive element binding protein signature 61 72 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 PANTHER DNA-BINDING DOMAIN 40 175 IPR044808 GO:0003700|GO:0009873
Mepo3g02356 210 Gene3D AP2/ERF domain 59 119 IPR036955 GO:0003700|GO:0006355
Mepo3g02356 210 MobiDBLite consensus disorder prediction 140 155 - -
Mepo3g02356 210 FunFam Ethylene-responsive transcription factor 2 59 119 - -
Mepo3g02356 210 MobiDBLite consensus disorder prediction 128 160 - -
Mepo3g02356 210 MobiDBLite consensus disorder prediction 29 53 - -
Mepo3g02356 210 Pfam AP2 domain 60 110 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 ProSiteProfiles AP2/ERF domain profile. 60 118 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 SMART rav1_2 60 124 IPR001471 GO:0003700|GO:0006355
Mepo3g02356 210 SUPERFAMILY DNA-binding domain 60 119 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02356 Mepo-Chr3 33352748 33353549 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02356 60 146 AP2-EREBP Transcription Factor Family AT2G44840 72.414 6.09e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g02356 AP2 2.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02356 K09286 - gmx:102663872 246.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02356 3 33352748 33353549 Mepo3g02356 3 33352748 33353549 ECH
Mepo1g04706 1 55014481 55015285 Mepo3g02356 3 33352748 33353549 PCT