Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02354 ATGTTGTTTTCTACCACAAAAGACTCAGAGTTTGCATATTTGGAAGATATTCAACAATACCTTCTTCATGATGATTCCAATATTCACACATCACATCAAGAAGTTCAAAGCCCTAACAATGAGTCAAAGACAACTGCATCTAAGCGTGAAGTGAAGACGCCTCCCACATGGAAGCGTTACAGGGGTGTGAGGCGTAGGCCGTGGGGAAAGTTTGCGGCGGAGATAAGAGACCCAAAAAAGAATGGTGCTAGGGTTTGGCTTGGTACTTATCTGACCGAGGAGGAAGCAGGTTTTGCTTACGACAAAGCTGCTTTCAAGATGCGTGGGCAAAAGGCCAAGCTCAATTTTCCCCACCTCATTGGCTCTGATGTGTACATGTCAGAGCCAAAGAGGGCGGTGGTTTTGAAACGGGAATCACCGGAGCCTTCTTCTTCTTCATCGGAAGATAGTTGTGACTCACCAGGGTCAAAGAAGAGGAGGAGCATGGTTGACCTACTTAACAAATTAGCCAAGAATAGAAGCCAAGTCATGGTGGTAGAAAATGAAATGGCCTCACTAGAAAATGATGTTGAGCAATGGGTGAATGAGTTGAGTGATTGCTCCCTTATATGGTGCTCTTAA 621 0.4493 MLFSTTKDSEFAYLEDIQQYLLHDDSNIHTSHQEVQSPNNESKTTASKREVKTPPTWKRYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYLTEEEAGFAYDKAAFKMRGQKAKLNFPHLIGSDVYMSEPKRAVVLKRESPEPSSSSSEDSCDSPGSKKRRSMVDLLNKLAKNRSQVMVVENEMASLENDVEQWVNELSDCSLIWCS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02354 206 Coils Coil 169 196 - -
Mepo3g02354 206 Pfam AP2 domain 59 109 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 MobiDBLite consensus disorder prediction 134 160 - -
Mepo3g02354 206 CDD AP2 58 119 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 MobiDBLite consensus disorder prediction 31 54 - -
Mepo3g02354 206 PRINTS Ethylene responsive element binding protein signature 99 119 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 ProSiteProfiles AP2/ERF domain profile. 59 117 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 Gene3D AP2/ERF domain 58 118 IPR036955 GO:0003700|GO:0006355
Mepo3g02354 206 SMART rav1_2 59 123 IPR001471 GO:0003700|GO:0006355
Mepo3g02354 206 PANTHER DNA-BINDING DOMAIN 37 181 IPR044808 GO:0003700|GO:0009873
Mepo3g02354 206 SUPERFAMILY DNA-binding domain 59 118 IPR016177 GO:0003677
Mepo3g02354 206 FunFam Ethylene-responsive transcription factor 2 58 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02354 Mepo-Chr3 33342880 33343500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02354 35 164 AP2-EREBP Transcription Factor Family AT2G44840 60.606 1.21e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mepo3g02354 AP2 2.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02354 K09286 - gmx:102663872 254.988