Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02327 ATGCCTCCGAAAGTGGTGAAAAGAGGTTTTGCGGCAAAGAAAGCGAAGGTTTCTTCAAAAACCGCAATTCAGAATCAACAACAAGAACCTGAACCTGAACCTGAACCTATCCAGAATCATGAAGATAATCATGTTGTTGATGCTAAGGCGGAGGAGAATTCTGTTGAAACAGTGCCTAATGGTGTAGCTATGGTGGAAAACAATGGAGAGGAGGTTAAGGAGTCCATAGATGAATATGAAAAAGATGAACACTTAGATTTTGAGGATAATTATCATGAGTATGATCCCGAGGAGTATGTTGGTGATGACTATGATGAGAGAGAAATTGAACAAGACGAGGGTCAGGAGGTCGGAGATGAAGTGGAGGAAGAACCTGAAGAGAATGTTGATGAAGAAGAGGGTGATACAGGTGATGAGGAAGTTGAAGAAGTTGAATATGTTTATGAAGAAGTTGAGGGTGATGATGATGATGTTGCTGGTGATGATGAGCATGCCAGTGAGGAGAACGTGCATGAGCATCTGGCTGATGTAAAGGAAGAGGAACAGGTTGAAGTTAGAAAGGAGACGCAGAAGCAGAAGGAATTGGAAGTATTTGTTGGGGGACTAGACAAGGATGCTACAGAGCATGATCTGAGGAAGGTTTTCAGTAAAGTTGGGGAGATTACTGAAGCCAGGATGACTATGAATCCTCAGACTAAAAGAAACAAGGGATTTGCTTTATTGCGTTTTGAAACTGTTGAGCAAGTGAAAAGAGCATTGGCAGAGCTAAAAAATCCAGTGATTAATGGCAAACAATGTGGCATCACTACCACCACATGTCAGGACAGTGATACTCTCTATTTAGATAACATATGCAAGACATGGAAAAAGGAAGCTTTAAAGGAGAAATTGAAACATTATGGAGTTGAAAGTTTCAAGGATTTGACTTTAGTTGAAGATGGTAACAAAGAGGGAACAAACTGTGGATTTGCTTTTTTGGAATTTTCATCTCGTTCAGATGCTAAGGACGCCTATAAGCGATTGCAGAAGACAGATGTTGTTTTTGGAGTTGATAAACCTGCCGAGGTTTCCTTTGCAAACTCCTTTATTGACCTGGGTGATGATATTATGGCACAGGTTAAAACAGTATTTATTGATTTACTGCCTCCTTCATGGGATGAAGATTATGTCCGAGCTCTTCTTAAGAAATATGGGGAGGTTGAAAAAGTTGAGCTTGCTAAGAACATGCCAGGTGCTCGCAGGAAGAATTATGGATTTGTTACGTTTGGTACACATGCTGCTGCTGTGGAATGCGCTGAGAGCATTACCAGTGCAGGGTTAGGTGAAGGCAACAAAAAGGCAAAAGTTAGGGCTAGATTGTCGAGACCTCTTCCGAAAGTTCGTGGTAAACATGTTCCTCATAGGGACATTTCTGGCCACAAGATTGGAAGATTGGCAAGGCCTTCACGTAGTAGACCTACACCACAGAGTCGACCTGCTCATGTGTTCAGAAGACTTGGGAGTCGCATTCCACCAGCTAGACCTTCTAGTGCAAGAAATAGACGTCCTGTAACGTCGATGCCAGTAAGAGCTAGGCCAGCCTCTCCTCCAGCTAGATCCTACAGGAGATTAGCAGCTGCATATCCAAAAAGTAGCATGAAGAGAGATTATGGTCGACCTGTGGAACTGCCACCTCCAAGAAGTAGAGTTTCTGCAGATTATGGTTCTCAGGTGGCCTCCCAAAGACGTCCATCTTATAGAGATTATCCAGCCCGTGACTCTGGCTCCGCTGACCTGCATAGGGATACATCTCGTACTGCACCAAGGAGGGGATATCTGGATGATGGTTATGATCGAAGACTTGAAAGACCTCCTTCTCCATCTCCCCGTCTAAGTTATCGCGAAGGACGCCCCCGCGATTATGACACACTATCTGGCTCGAAACGTCCTTATGCTGCCATAGATGACATTTCTCCACGGTATGTTGATGCTGGTGCTCGCCAATCAAGATCTCGTTTAGACTATGACTATGGAGGCAGTGCTTCCCGATATAGAGAGGCTTATGGTGATAGGCTCGAAAGATCTAGTTTAGGATATAGTGGCAGTAGAAGTTCTCTATCTACTCAAAATTCACATGGGGCATATAGCAGTCGACAGGACCCAAGTTATGGCAGAGGCTCTCTTGGTGGTAGTGATGGGGGTATCTACTCATCAAGCTATGGTGGTGATTACTTATCTCGTGGAAGTGATGTTGGTGGCAGCTCATATTCATCCATGTATTCTAGTAGGGGTATGAACGGTAGTAGCACTTATATGAGTGGTAGCGGTGGTGGATCTAGATCTTATTATTGA 2331 0.438 MPPKVVKRGFAAKKAKVSSKTAIQNQQQEPEPEPEPIQNHEDNHVVDAKAEENSVETVPNGVAMVENNGEEVKESIDEYEKDEHLDFEDNYHEYDPEEYVGDDYDEREIEQDEGQEVGDEVEEEPEENVDEEEGDTGDEEVEEVEYVYEEVEGDDDDVAGDDEHASEENVHEHLADVKEEEQVEVRKETQKQKELEVFVGGLDKDATEHDLRKVFSKVGEITEARMTMNPQTKRNKGFALLRFETVEQVKRALAELKNPVINGKQCGITTTTCQDSDTLYLDNICKTWKKEALKEKLKHYGVESFKDLTLVEDGNKEGTNCGFAFLEFSSRSDAKDAYKRLQKTDVVFGVDKPAEVSFANSFIDLGDDIMAQVKTVFIDLLPPSWDEDYVRALLKKYGEVEKVELAKNMPGARRKNYGFVTFGTHAAAVECAESITSAGLGEGNKKAKVRARLSRPLPKVRGKHVPHRDISGHKIGRLARPSRSRPTPQSRPAHVFRRLGSRIPPARPSSARNRRPVTSMPVRARPASPPARSYRRLAAAYPKSSMKRDYGRPVELPPPRSRVSADYGSQVASQRRPSYRDYPARDSGSADLHRDTSRTAPRRGYLDDGYDRRLERPPSPSPRLSYREGRPRDYDTLSGSKRPYAAIDDISPRYVDAGARQSRSRLDYDYGGSASRYREAYGDRLERSSLGYSGSRSSLSTQNSHGAYSSRQDPSYGRGSLGGSDGGIYSSSYGGDYLSRGSDVGGSSYSSMYSSRGMNGSSTYMSGSGGGSRSYY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02327 776 CDD RRM_SF 376 433 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 690 717 - -
Mepo3g02327 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 273 IPR000504 GO:0003723
Mepo3g02327 776 Gene3D - 154 270 IPR012677 -
Mepo3g02327 776 Gene3D - 370 456 IPR012677 -
Mepo3g02327 776 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 22 730 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 105 141 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 34 51 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 442 645 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 1 59 - -
Mepo3g02327 776 SMART rrm1_1 196 269 IPR000504 GO:0003723
Mepo3g02327 776 SMART rrm1_1 375 450 IPR000504 GO:0003723
Mepo3g02327 776 SMART rrm1_1 278 357 IPR000504 GO:0003723
Mepo3g02327 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 277 361 IPR000504 GO:0003723
Mepo3g02327 776 MobiDBLite consensus disorder prediction 744 776 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 579 618 - -
Mepo3g02327 776 SUPERFAMILY RNA-binding domain, RBD 196 301 IPR035979 GO:0003676
Mepo3g02327 776 CDD RRM_SF 197 266 - -
Mepo3g02327 776 Gene3D - 277 360 IPR012677 -
Mepo3g02327 776 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 456 IPR000504 GO:0003723
Mepo3g02327 776 FunFam Heterogeneous nuclear ribonucleoprotein Q 277 360 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 689 723 - -
Mepo3g02327 776 Coils Coil 62 82 - -
Mepo3g02327 776 MobiDBLite consensus disorder prediction 18 33 - -
Mepo3g02327 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 434 IPR000504 GO:0003723
Mepo3g02327 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 265 IPR000504 GO:0003723
Mepo3g02327 776 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 279 345 IPR000504 GO:0003723
Mepo3g02327 776 SUPERFAMILY RNA-binding domain, RBD 276 434 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02327 Mepo-Chr3 32925229 32929978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02327 197 436 Eukaryotic Initiation Factors Gene Family AT4G34110 21.374 1.66e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02327 - - gmx:100811387 872.848