Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02245 ATGGAATACGATGCTATCCCTCAAGAGGCAATGTGGCAAATGAGCTTGAGGCCAAGTGAAACAATGGAATCAGGACCGTATCCGGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACCGGTCTTTGTAGATTTGGAGCAACATGTCGGTTTAATCATCCTCCTAACAGGAAGCTGGCTATTGCCACTGCACGGATGAAAGGCGAGTTCCCAGAAAGGTTAGGGCAGCCAGAATGTCAGTACTATCTGAAAACAGGAACTTGCAAATTTGGAGCCACATGCAGGTTTCATCATCCTAAAGACAAGGCTGGGGTTGCTGGAAGAGTTGCCTTGAATATTTTAGGCTATCCACTCCGCCCAAATGAGTCTGAATGTGCTTATTATTTAAGAACTGGTCAATGCAAATTTGGGAACACTTGTAAATTTCACCATCCTCAACCAAGTAATATGGTACTTCCAATGAGGGGTTCTCCTGTTTATCCTACTGTCCAGTCTCCAACTACAGCAGGTCAGCAGTCATATGCGGCAGGAATTACTAATTGGTCTACTTCATCATATATTCCCAGTCCAAGGTGGCAAGGCCCCTCAAGTTATGCACCTTTAATTCTACCTCAAGGAGTGGTTTCAGTGCCTGGGTGGAGTACATACAATGGTCAAATGGGATCAGACAGTCCACAACAAACAATGAGAAATGATCAAACCTATGGAACTTCTCACCAAGGTGATCCAGAAAATGCAGGACTCCAAGGGGTATATTCTCAATACCGTTCTGGCTCTGTTCCAGTAGGATTCTATGCTTTGCAAAGGGAGAACATTTTTCCAGAGAGACCTGATCAGCCTGAATGCCAATTCTACATGAAGACTGGGGATTGCAAGTTCGGTGCTGTCTGTCGTTTTCACCATCCACGCGAGAGGACGATTCCTGCCCCTGATTGTGTTTTGAGTCCCCTTGGCCTTCCTTTGCGTCCTGGAGAACCACTTTGTGTATTCTATTCGCGGTATGGCATATGCAAATTTGGCCCAAGCTGCAAGTTTGACCATCCAATGGGAATCTTCACCTATAATGTATCTGCATCACCTTTAGCTGAAGCCGCAGGACGGCGTCTGCTAGGTTCTTCATCAGGAACTGCTGCATTAAGTTTATCATCAGAAGGACTTGTTGAGTCGGGCTCAGTAAAGCCAAGAAGGCTTTCATTATCAGAGACTAGACCGAATCCTTCCGGTGATGATGACATTGATGATGAGGGATAA 1257 0.4543 MEYDAIPQEAMWQMSLRPSETMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIATARMKGEFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESECAYYLRTGQCKFGNTCKFHHPQPSNMVLPMRGSPVYPTVQSPTTAGQQSYAAGITNWSTSSYIPSPRWQGPSSYAPLILPQGVVSVPGWSTYNGQMGSDSPQQTMRNDQTYGTSHQGDPENAGLQGVYSQYRSGSVPVGFYALQRENIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERTIPAPDCVLSPLGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNVSASPLAEAAGRRLLGSSSGTAALSLSSEGLVESGSVKPRRLSLSETRPNPSGDDDIDDEG 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02245 418 FunFam Zinc finger nuclease 2 29 106 - -
Mepo3g02245 418 ProSiteProfiles Zinc finger C3H1-type profile. 278 306 IPR000571 GO:0046872
Mepo3g02245 418 Gene3D - 107 154 - -
Mepo3g02245 418 MobiDBLite consensus disorder prediction 384 418 - -
Mepo3g02245 418 SUPERFAMILY CCCH zinc finger 79 104 IPR036855 GO:0046872
Mepo3g02245 418 Gene3D - 29 106 - -
Mepo3g02245 418 MobiDBLite consensus disorder prediction 221 247 - -
Mepo3g02245 418 ProSiteProfiles Zinc finger C3H1-type profile. 31 58 IPR000571 GO:0046872
Mepo3g02245 418 SUPERFAMILY CCCH zinc finger 327 351 IPR036855 GO:0046872
Mepo3g02245 418 PANTHER PROTEIN PHOSPHATASE RELATED 16 371 - -
Mepo3g02245 418 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872
Mepo3g02245 418 ProSiteProfiles Zinc finger C3H1-type profile. 75 103 IPR000571 GO:0046872
Mepo3g02245 418 SUPERFAMILY CCCH zinc finger 281 306 IPR036855 GO:0046872
Mepo3g02245 418 SUPERFAMILY CCCH zinc finger 122 149 IPR036855 GO:0046872
Mepo3g02245 418 Gene3D - 270 353 - -
Mepo3g02245 418 SMART c3hfinal6 278 305 IPR000571 GO:0046872
Mepo3g02245 418 SMART c3hfinal6 75 102 IPR000571 GO:0046872
Mepo3g02245 418 SMART c3hfinal6 30 57 IPR000571 GO:0046872
Mepo3g02245 418 SMART c3hfinal6 121 148 IPR000571 GO:0046872
Mepo3g02245 418 SMART c3hfinal6 324 351 IPR000571 GO:0046872
Mepo3g02245 418 FunFam CCCH type zinc finger protein 276 361 - -
Mepo3g02245 418 SUPERFAMILY CCCH zinc finger 35 58 IPR036855 GO:0046872
Mepo3g02245 418 ProSiteProfiles Zinc finger C3H1-type profile. 121 149 IPR000571 GO:0046872
Mepo3g02245 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 77 102 IPR000571 GO:0046872
Mepo3g02245 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 32 57 IPR000571 GO:0046872
Mepo3g02245 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 305 IPR000571 GO:0046872
Mepo3g02245 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 351 IPR000571 GO:0046872
Mepo3g02245 418 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 124 148 IPR000571 GO:0046872
Mepo3g02245 418 MobiDBLite consensus disorder prediction 221 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02245 Mepo-Chr3 32173805 32180842 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02245 11 416 C2H2 Transcription Factor Family AT3G02830 61.928 2.02e-176 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo3g02245 zf-CCCH 5e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02245 - - gmx:100786261 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02245 3 32173805 32180842 Mepo3g02245 3 32173805 32180842 ECH