LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g02218	ATGTCCTCTCCACATACTTTCTTCACCAACCTTGGCCTTGGCTACTCCATAGCCATAACCCTAGCTTTTCTTGTTCTCCTCGCCACTCTCTTCCTCTCTTTCTACCTCTGTTGCCGCAAAAACAACAATCCCAACAACAATCTCAACAACAACAATAACACTCTCAACTACGCAGAGGGTGTCATTGTACGAACTGACATATTCATAGCTGAAAACGATGAAGAAAACTCAGTGGTGGGTCTAGAAGACAACGTGATAAATTCGTATCCGAGGTTTCAGTTCAGCAGAGACAGCGCAACTATTTTAGGACAGAACACCACGTGTTCCATTTGTTTGTGTGAGTACAAGGATTCGGAGATGCTGAGGATGATGCCTGAATGTCGTCATTACTTTCATCTATGTTGTCTTGATTCATGGTTGAAGCTTAATGGCTCTTGTCCCGTTTGTCGAAACTCACCTCTTCCGACACCACTTTCTACTCCGCTTCAAGAGGTTGTTCCCCTTTCGCAGTATGCTGCTGATCGGAGACGAAGGAGGTGA	540	0.45	MSSPHTFFTNLGLGYSIAITLAFLVLLATLFLSFYLCCRKNNNPNNNLNNNNNTLNYAEGVIVRTDIFIAENDEENSVVGLEDNVINSYPRFQFSRDSATILGQNTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPLPTPLSTPLQEVVPLSQYAADRRRRR	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g02218	179	Pfam	Ring finger domain	107	150	IPR001841	-
	Mepo3g02218	179	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	67	154	IPR013083	-
	Mepo3g02218	179	ProSiteProfiles	Zinc finger RING-type profile.	108	150	IPR001841	-
	Mepo3g02218	179	PANTHER	RING-H2 FINGER PROTEIN ATL67	5	178	IPR044289	GO:0016567\|GO:0016740
	Mepo3g02218	179	SMART	ring_2	108	149	IPR001841	-
	Mepo3g02218	179	SUPERFAMILY	RING/U-box	101	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g02218	Mepo-Chr3	31884337	31885315	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g02218	12	170	C3H Transcription Factor Family	AT5G06490	35.795	2.68e-34	118

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g02218	-		-	lja:Lj1g3v2807930.1	241.506

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g02218	3	31884337	31885315	Mepo3g02218	3	31884337	31885315	ECH
	Mepo3g02218	3	31884337	31885315	Mepo1g03822	1	44439447	44440406	PCT