Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02176 ATGGAAGAAACAGAAGAGAGGGAGGAAAATGTAGAACCAGAACCAAACAACCCAGAAAATGAGAATAAAGAAGAAGAATGCAACGCTGTGGTGGTGGTGGAGGAGATCCAAGGACTCATCGAATCGGTGGTTCAATTCGGTGAATATAGAAGAACACAAAGGAAAGAATCACACAACCTCGCTCGTCGTTTCAAACACATGTTGCCTCTTATGGAAGACCTTCGTGACCTTCGTCATCCTGCTCCTCGAAACGGCGTTGTTTGGTTGAAGAACCTCAGAGATGCGCTTTTCTTCGCTAAGGAATTGTTGAAATTGTGTAGCCAAGGAAGCAAAATTCACCTCGCATGGGAAGGTGAGATGGTTATGATCAAATTTCAGAAGGTTTATGAAAAATTAAGTCAAGCTTTTGATCGTGTGCCTTGTGATGAATTAGGAATTTCTGATGAAGTAAAAGAACAGCTTGAGCTAATGCACGTGCAACTCAGGAGGGCAAGGAGAAGAACTGATACACAAGACATAGAGCTAGCAATGGATATGATGGTGGTGTTCTCCGATGAAAATGATCGTAATGCCGATAGTGCCATTATCGAAAGGCTTGCAAAAAAATTGGAGCTTCACAGTGTTGAGGATCTTGAGGTAGAGACTGTGGCTGTTGGAAACCTTGTTAGAGAAAGAAAAGGGAAGCAAAGTGAGAGTACAAAAAAAATTGTTGACCTTCTTAACAGATTCAAAAGGACTTCAGGCATGGAAGAAACCGGTGTTGTCTTTGATGATGATCATGCCATGCCTAATAAGATGCTTGGAAGAAGCACTTCTTTGGTCATCCCTCATGAGTTTCTGTGCCCAATAACACTTGAAATTATGTCTGATCCTGTTATTATTGCAAGTGGCCAGACATATGAAAGGGAAAGCATAGAGAAGTGGTTCAAATCCAATCACAAAACATGTCCAAAGACAAGGCAGCCTTTGGAACATCTTCAGTTAGCACCAAACTGTGCCTTAAGAAATTTAATTGCTGAATGGTGTGTGAACAACAACTTCAAACTTCCAAAAATCTACTCTTCATGTCAAGAAACCACTCCAACTGAAAACCAAGAAGAAATTCCATCTTTGGTTGAAAGCCTATCGTCGATCAACTTAGAACATCAAAGAAAGGCGGTCAAGAGAATCCGCATGTTATCAAAAGAGAATTCAGAGAACAGAATTTTAGTCGCCGAAAACGGAGGAATACCACCATTAGTACAAATCCTATCATATCCAGATTCAAAAATAAAAGAACATGCTGTTACAGCACTTTTGAACTTATCAATTGATGAAGCTAACAAAAAACTTATATCAAAAGAAGGTGCTATTCCAGCTATAATAGAAGTATTGGAAAATGGAAGTATTGTGGCTAAAGAAAACTCTGCAGCAGCTTTATTTAGCTTATCAATGATTGATGAAAATAAAGAGGTTGTAGGAATGTCAAATGGGATTCCAGCTTTGGTAAATTTATTACAAAATGGAACTGTTAGAGGGAAAAAAGATGCTGCTACAGCACTTTTTAGCTTATCATTAAACCATGCAAATAAAGAGAGAGCTATAAAAGCTGGAATTGTGACAGCTTTACTTCAATTGTTAAAGGACAGAAACTTGGGAATGATTGATGAAGCACTTTCTATTTTGTTGCTACTTGTGTTGAATCCTGAAGGGAGACATGAGGTTGGACAATTATCATTTATTGAAACTCTTGTTGAGTTTACTAGAGAAGGGACTCCAAAGAACAAAGAATGTGCAGCTTCTGTTCTTCTTGAGTTGTGTTCAAGTAATTCATCTTTTACTTTGGCAGCACTTCAGTTTGGAGTTTATGAGCATTTGATTGAGATTAAAGAAAGTGGTACAAATAGAGCACAAAGGAAAGCAAATGCAATTTTAGATCTCATAAAAAGGAGTGAGCAAATTTAA 1944 0.3827 MEETEEREENVEPEPNNPENENKEEECNAVVVVEEIQGLIESVVQFGEYRRTQRKESHNLARRFKHMLPLMEDLRDLRHPAPRNGVVWLKNLRDALFFAKELLKLCSQGSKIHLAWEGEMVMIKFQKVYEKLSQAFDRVPCDELGISDEVKEQLELMHVQLRRARRRTDTQDIELAMDMMVVFSDENDRNADSAIIERLAKKLELHSVEDLEVETVAVGNLVRERKGKQSESTKKIVDLLNRFKRTSGMEETGVVFDDDHAMPNKMLGRSTSLVIPHEFLCPITLEIMSDPVIIASGQTYERESIEKWFKSNHKTCPKTRQPLEHLQLAPNCALRNLIAEWCVNNNFKLPKIYSSCQETTPTENQEEIPSLVESLSSINLEHQRKAVKRIRMLSKENSENRILVAENGGIPPLVQILSYPDSKIKEHAVTALLNLSIDEANKKLISKEGAIPAIIEVLENGSIVAKENSAAALFSLSMIDENKEVVGMSNGIPALVNLLQNGTVRGKKDAATALFSLSLNHANKERAIKAGIVTALLQLLKDRNLGMIDEALSILLLLVLNPEGRHEVGQLSFIETLVEFTREGTPKNKECAASVLLELCSSNSSFTLAALQFGVYEHLIEIKESGTNRAQRKANAILDLIKRSEQI 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02176 647 Pfam Armadillo/beta-catenin-like repeat 480 518 IPR000225 GO:0005515
Mepo3g02176 647 Pfam Armadillo/beta-catenin-like repeat 397 436 IPR000225 GO:0005515
Mepo3g02176 647 SUPERFAMILY ARM repeat 367 638 IPR016024 -
Mepo3g02176 647 PANTHER U BOX DOMAIN-CONTAINING 54 641 - -
Mepo3g02176 647 CDD RING-Ubox_PUB 276 328 IPR045210 -
Mepo3g02176 647 FunFam RING-type E3 ubiquitin transferase 272 348 - -
Mepo3g02176 647 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 346 IPR013083 -
Mepo3g02176 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 490 532 IPR000225 GO:0005515
Mepo3g02176 647 FunFam RING-type E3 ubiquitin transferase 353 647 - -
Mepo3g02176 647 Gene3D - 470 646 IPR011989 -
Mepo3g02176 647 SMART Ubox_2 278 341 IPR003613 GO:0004842|GO:0016567
Mepo3g02176 647 MobiDBLite consensus disorder prediction 11 25 - -
Mepo3g02176 647 Coils Coil 147 167 - -
Mepo3g02176 647 SMART arm_5 479 519 IPR000225 GO:0005515
Mepo3g02176 647 SMART arm_5 561 601 IPR000225 GO:0005515
Mepo3g02176 647 SMART arm_5 438 478 IPR000225 GO:0005515
Mepo3g02176 647 SMART arm_5 520 560 IPR000225 GO:0005515
Mepo3g02176 647 SMART arm_5 397 437 IPR000225 GO:0005515
Mepo3g02176 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 408 450 IPR000225 GO:0005515
Mepo3g02176 647 Pfam U-box domain 275 345 IPR003613 GO:0004842|GO:0016567
Mepo3g02176 647 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 449 491 IPR000225 GO:0005515
Mepo3g02176 647 Gene3D - 28 141 IPR036537 GO:0007166
Mepo3g02176 647 MobiDBLite consensus disorder prediction 1 25 - -
Mepo3g02176 647 FunFam RING-type E3 ubiquitin transferase 29 142 - -
Mepo3g02176 647 ProSiteProfiles U-box domain profile. 274 348 IPR003613 GO:0004842|GO:0016567
Mepo3g02176 647 Gene3D - 347 468 IPR011989 -
Mepo3g02176 647 SUPERFAMILY RING/U-box 274 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02176 Mepo-Chr3 31322591 31325902 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02176 32 647 U-box Gene Family AT5G42340 61.066 0.0 731
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02176 - - psat:127127055 1053.89