Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02129 ATGGATCACGGGGACCATATGGCGTTATCCAATTCTGCATCTTACTATATGCAGCAGAGAGTACTACCTGGTTCTGGAGCACAACCCGAGTTACATGTTTCGCCGAGTTTTAATCAACTGTCTAATCCCAATCTACCATTTCAATCCAGCATTGGTGGTGGTGGTAATAACATTGGAACCACACTACCGCTAGAATCTTCGGCAATTTCATCTCAAGGTGTCAATGTGATTGGTCATACTGGAGTACCGTCTGGGGAGACTGTGAAAAGGAAGAGAGGAAGGCCGAGGAAATATGGCGCTGATAGAGTTGTGTCATTGGCACTGAGTCCAAGTCCATCACCATCTAGTAATCCTGGAACTGTGACGCAAGGTGGGCCGAAACGAGGGAGAGGGCGTCCGCCTGGGAGTGGGAAGAAACAACAATTGGCTTCTTTTGGAGAGTTGATGTCTGTTACAGCTGGGACGGGATTCATTCCTCATGTCATCCACATTGCAAGTGGAGAAGACATTGCATCAAAAATCTTGACATTTTCTCAGGTGCGAGCTAGAGCTCTTTGTGTTCTGTCATCTTCTGGCAGTGTCTCATCCGTCATTATTCGTGAGCCTTCAATTTCAGGCGGTACTCTCAAATATGAGGGACATTTTCACATAATGAGCATGTCAGGTTGTTACGTGCCTACCGAAAATGGCTCCTCACGGAACCGAGATGGTGGACTTAGTATTTCCCTTCTTGGTCCTGATGGCCGCCTCTTTGGTGGAGCAGTTGGTGGACCGCTCGTTGCTGCCAGTCCTGTCCAGGTGATGATTGGGAGCTTTCTTTGGGGTAGATTGAAGGCAAAGAACAAGAAAAAGGAAAGCTCAGAAGATGCAGAAGGTGCTGTTGAATCAGATCATCAAGGAGCTCATAATCCAGCCGCACTGAATAGCATTTCACCACATCAAAATCTGACTCCAACCTCATCCTTAAGTCCTTGGTCAGCAGCATCGCGTCAGATGGATATGGGTAACTCCCATGCTGACATTGATTTAATGCGTGGTTGA 1041 0.4726 MDHGDHMALSNSASYYMQQRVLPGSGAQPELHVSPSFNQLSNPNLPFQSSIGGGGNNIGTTLPLESSAISSQGVNVIGHTGVPSGETVKRKRGRPRKYGADRVVSLALSPSPSPSSNPGTVTQGGPKRGRGRPPGSGKKQQLASFGELMSVTAGTGFIPHVIHIASGEDIASKILTFSQVRARALCVLSSSGSVSSVIIREPSISGGTLKYEGHFHIMSMSGCYVPTENGSSRNRDGGLSISLLGPDGRLFGGAVGGPLVAASPVQVMIGSFLWGRLKAKNKKKESSEDAEGAVESDHQGAHNPAALNSISPHQNLTPTSSLSPWSAASRQMDMGNSHADIDLMRG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02129 346 Gene3D - 159 291 - -
Mepo3g02129 346 PRINTS AT-hook-like domain signature 125 136 IPR017956 GO:0003677
Mepo3g02129 346 PRINTS AT-hook-like domain signature 89 99 IPR017956 GO:0003677
Mepo3g02129 346 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Mepo3g02129 346 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Mepo3g02129 346 ProSiteProfiles PPC domain profile profile. 154 295 IPR005175 -
Mepo3g02129 346 CDD DUF296 159 272 IPR005175 -
Mepo3g02129 346 MobiDBLite consensus disorder prediction 75 141 - -
Mepo3g02129 346 MobiDBLite consensus disorder prediction 108 123 - -
Mepo3g02129 346 MobiDBLite consensus disorder prediction 283 346 - -
Mepo3g02129 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 157 280 - -
Mepo3g02129 346 MobiDBLite consensus disorder prediction 302 333 - -
Mepo3g02129 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 159 272 IPR005175 -
Mepo3g02129 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 54 320 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02129 Mepo-Chr3 30737084 30744461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02129 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 46.594 5.15e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02129 - - gmx:100814615 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02129 3 30737084 30744461 Mepo3g02129 3 30737084 30744461 ECH
Mepo3g02129 3 30737084 30744461 Mepo1g03739 1 43599046 43606492 PCT