Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02117 ATGAACAATAACAATAGAGGGAGATATCCACCTGGGATTGGGTTAGGAGGACGAGGTAGTGGTGGTGGTTTGAACTCAAACCCTGACAATGCTAACGCCGGGTTTCAACAGAGACCACATTATCAACAACAACAACAACAGTATGTGCAGAGGCACATGATGCAAAATCAGAATCAGCATCAGCAACACTATCAGCATCATCAACAGAATCAACAACAGTATCAGCAGCAGAATCAACAGCAGCAGCAGCAACAACAACAGTGGCTGAGGAGGAACCAGTTGGGTGGTGGTACCGACACCAATGTTGTCGAGGAGGTTGAGAAGACTGTACAGTCTGAAACAAATGACCCTAGTTCACAAGATTGGAAGGCAAAACTAAAGCTTCCACCAGCTGATACACGCTATAGGACAGAGGACGTGACAGCAACTAAGGGAAATGAGTTTGAGGATTACTTTTTGAAGCGTGAGCTGCTAATGGGAATATATGAGAAGGGGTTTGAAAGGCCTTCCCCTATCCAAGAAGAAAGCATTCCAATTGCCCTTACTGGCAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTAGCATTCCTGCATTGGAAAAAATTGATCAAGATAACAATATTATTCAAGTTGTTATACTGGTTCCAACACGAGAATTGGCTCTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTACAAATTCAAGTTATGGTCACAACAGGTGGTACCAGCCTGAAAGACGACATTATGCGTTTATATCAACCTGTTCATCTGCTAGTTGGTACTCCCGGAAGAATATTGGATCTTGCAAAGAAGGGTGTCTGTGTTCTGAAAGATTGTTCAATGCTTGTCATGGATGAGGCTGATAAACTTCTCTCCCCAGAGTTCAAGCCTTCAATAGAGCATCTGATTCAATTTCTTCCTTCAAACCGTCAAATCCTATTGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAACGATAGATATCTTCGTAAGCCATATATCATTAACCTTATGGATGAGCTTACCCTGAAGGGTATTACACAATATTATGCATTTGTGGAGGAGAGGCAGAAAGTCCACTGCCTAAATACTCTTTTTTCTAAGCTGCAAATAAACCAATCGATCATCTTCTGCAATTCGGTGAATCGAGTTGAACTCCTTGCTAAGAAAATCACAGAACTAGGGTATTCATGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAATAGAGTTTTCCATGACTTCCGCAATGGTGCATGCAGGAATCTCGTTTGTACTGATCTTTTCACTCGAGGAATAGATATCCAAGCAGTGAATGTTGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACATATCTGCACAGGGTTGGTCGATCTGGGAGGTTTGGGCACCTTGGTTTAGCAGTGAACTTGATAACCTATGAGGATCGCTTCAATCTGTATAGGATTGAACAAGAACTTGGCACTGAAATAAAACAAATTCCGCCATTCATTGATCAGGCTATATACTGTCAGTGA 1563 0.4139 MNNNNRGRYPPGIGLGGRGSGGGLNSNPDNANAGFQQRPHYQQQQQQYVQRHMMQNQNQHQQHYQHHQQNQQQYQQQNQQQQQQQQQWLRRNQLGGGTDTNVVEEVEKTVQSETNDPSSQDWKAKLKLPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFSIPALEKIDQDNNIIQVVILVPTRELALQTSQVCKELGKHLQIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFKPSIEHLIQFLPSNRQILLFSATFPVTVKDFNDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAIYCQ 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02117 520 Pfam DEAD/DEAH box helicase 171 335 IPR011545 GO:0003676|GO:0005524
Mepo3g02117 520 Coils Coil 64 91 - -
Mepo3g02117 520 FunFam ATP-dependent RNA helicase DDX6 127 350 - -
Mepo3g02117 520 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 146 174 IPR014014 GO:0003724
Mepo3g02117 520 CDD DEADc_DDX6 148 348 - -
Mepo3g02117 520 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 177 347 IPR014001 -
Mepo3g02117 520 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 293 301 IPR000629 -
Mepo3g02117 520 Gene3D - 100 350 IPR027417 -
Mepo3g02117 520 MobiDBLite consensus disorder prediction 1 88 - -
Mepo3g02117 520 Pfam Helicase conserved C-terminal domain 372 478 IPR001650 -
Mepo3g02117 520 FunFam ATP-dependent RNA helicase DDX6 351 520 - -
Mepo3g02117 520 SMART helicmild6 397 478 IPR001650 -
Mepo3g02117 520 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 517 IPR001650 -
Mepo3g02117 520 Gene3D - 351 519 IPR027417 -
Mepo3g02117 520 CDD SF2_C_DEAD 358 487 - -
Mepo3g02117 520 SMART ultradead3 165 361 IPR014001 -
Mepo3g02117 520 MobiDBLite consensus disorder prediction 23 88 - -
Mepo3g02117 520 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 57 519 - -
Mepo3g02117 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 500 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02117 Mepo-Chr3 30598487 30628425 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02117 146 510 Eukaryotic Initiation Factors Gene Family AT3G19760 38.965 2.04e-94 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02117 K12614 - tcc:18614173 828.55