Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02114 ATGTCATTCACAGGAACTCTTGATAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGATTTGCTAACTCTTGAAGGTATACCTTACCATAAAAGTTGCTTAAAATGCACTCACTGCAAGGGAAATCTGACGATGAGTACTTACTCCTCAATGGATGGTGTCCTCTATTGCAAGCCCCATTTTGAACAACTTTTCAAGGAATCTGGAAATTTCAGCAAGAACTTTCAAGCAAAGTCTTCTGAGAAGATAAATGAGTTGATGAACAGGACACCAAGTAGACTCTCCTCTATGTTCAGTGGAACTCTAGACAAATGTGCAGTTTGCACAAAAACTGTCTATCCTTTGGAAAAGATGTCATTGGAAGGGGAATGTTACCACAAGACTTGCTTTAGGTGTGCTCATGGAGGTTGCCACCTTACACATTCTTCCTATGCTGCCCTAGATGGTGTCCTCTATTGCAAGCATCATTTTCAACAGCTTTTCATGGAGAAAGGAAACTACAATCATGTACTTCAAGCTGCTGCAAACAAAAAGAATTCCACTCCACCACCTGAACCAGCTGATGAGGAGGAACCATCAAAACCAGAAGAAACTGAGGAACATGCAGAAGAAAAGACTGAAACACCAGAAACATGA 639 0.4069 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCLKCTHCKGNLTMSTYSSMDGVLYCKPHFEQLFKESGNFSKNFQAKSSEKINELMNRTPSRLSSMFSGTLDKCAVCTKTVYPLEKMSLEGECYHKTCFRCAHGGCHLTHSSYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAANKKNSTPPPEPADEEEPSKPEETEEHAEEKTETPET 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02114 212 FunFam LIM domain and actin-binding 1 4 74 - -
Mepo3g02114 212 PANTHER OS06G0237300 PROTEIN 6 80 - -
Mepo3g02114 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Mepo3g02114 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mepo3g02114 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 172 - -
Mepo3g02114 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mepo3g02114 212 Pfam LIM domain 10 65 IPR001781 -
Mepo3g02114 212 Pfam LIM domain 106 161 IPR001781 -
Mepo3g02114 212 SMART lim_4 105 157 IPR001781 -
Mepo3g02114 212 SMART lim_4 9 61 IPR001781 -
Mepo3g02114 212 Gene3D Cysteine Rich Protein 102 170 - -
Mepo3g02114 212 Gene3D Cysteine Rich Protein 5 98 - -
Mepo3g02114 212 MobiDBLite consensus disorder prediction 174 212 - -
Mepo3g02114 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mepo3g02114 212 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Mepo3g02114 212 FunFam LIM domain and actin-binding 1 100 170 - -
Mepo3g02114 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02114 Mepo-Chr3 30569304 30571063 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mepo3g02114 LIM 1.2e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02114 - K09377 gmx:100788569 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g02114 3 30569304 30571063 Mepo3g02114 3 30569304 30571063 ECH
Mepo3g02114 3 30569304 30571063 Mepo1g03712 1 43365083 43367108 PCT