LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g02066	ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAATGCTACAAGCAGACAAGTGACATTCTCAAAGAGGCGTAATGGTTTGCTGAAGAAAGCATTTGAGTTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTATCATCTTTTCTCCAAGAGGAAAACTTTATGAATTTTCAAGTTCCTGCATGCAGGACACAATTGAACGATACCGTAGGAATACCAGGAGTGCTCAACCGATGCAAAGATCAGATGAACAAAATATGCAGAATTTGAAGCATGAAACAGCAAGTTTGATGAAGAAAATTGAGCTTCTTGAAGCTTCAAAACGGAAACTCATGGGAGAAGGTTTGGGATCATGCTCTTTGGAAGAACTACAACAGATAGAACAACAGTTGGAAAAGAGTGTAAGCGTTGTTCGAGCAAGAAAGAATCAGGCATACAAGAATCAAATTGACCAACTAAAAGAAAAGGAAAAAACCCTACTTGCCGAAAATGCCAGGCTCGCTAAGCAGCCACCACAGCCACAGCCACAGCCAACACCAAAGGATCATCAGAGAGAAAATCAACAACCCTATGCTGAAAGCAGTCCAAGCTCAGATGTAGTGACTGAATTGTTCATTGGACTGCACAGGTCTTGTTGA	639	0.4131	MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSCMQDTIERYRRNTRSAQPMQRSDEQNMQNLKHETASLMKKIELLEASKRKLMGEGLGSCSLEELQQIEQQLEKSVSVVRARKNQAYKNQIDQLKEKEKTLLAENARLAKQPPQPQPQPTPKDHQRENQQPYAESSPSSDVVTELFIGLHRSC	212

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g02066	212	SUPERFAMILY	SRF-like	3	78	IPR036879	GO:0003677\|GO:0046983
	Mepo3g02066	212	MobiDBLite	consensus disorder prediction	180	200	-	-
	Mepo3g02066	212	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	CDD	MADS_MEF2_like	3	77	IPR033896	GO:0000977\|GO:0045944
	Mepo3g02066	212	Coils	Coil	87	107	-	-
	Mepo3g02066	212	MobiDBLite	consensus disorder prediction	164	200	-	-
	Mepo3g02066	212	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	178	-	-
	Mepo3g02066	212	FunFam	MADS-box protein SOC1	14	95	-	-
	Mepo3g02066	212	Pfam	K-box region	83	170	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mepo3g02066	212	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	Gene3D	-	14	96	IPR036879	GO:0003677\|GO:0046983
	Mepo3g02066	212	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mepo3g02066	212	Coils	Coil	121	170	-	-
	Mepo3g02066	212	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mepo3g02066	212	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g02066	Mepo-Chr3	30066660	30083509	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g02066	1	158	MADS-box Gene Family	AT2G45660	75.949	2.32e-84	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mepo3g02066		K-box	1.8e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g02066	-		-	gmx:100784678	320.472

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mepo3g02066	3	30066660	30083509	Mepo1g03611	1	41994806	42005987	PCT