Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02064 ATGGGTAGAGGGAGGGTTGAACTGAAGAGGATAGAAAACAAAATCAACCGGCAAGTTACTTTCTCCAAAAGAAGAAATGGTTTGCTGAAAAAAGCCTATGAACTCTCAGTTCTATGTGATGCTGAGATTGCTCTTATCATTTTCTCTAGTCGTGGAAAGCTTTCTGAATTTGCAAGCTCAACTTCAGGCATTGGCAAAACCTTGGAACGATACCAGAGATGCTCTTTTACTTCTCAAAATGATAATGTTAATGAACATGAAACTCAGAACTGGTACCAAGAGATGTCAAAGCTAAAGGCAAAGTATGAGTCACTTCAAAAGTCACAAAGACAATTGCTAGGGGAAGATCTTGGACCATTAAACATGAAGGAGCTACAAAATCTTGAGAAGCAACTTGAAGGAGCTTTAGCACAAGCTAGGCAGAGAAAGACACAGATTATGATTGAACAAATGGAAGAACTTAAGAGAAAGGAACGTCATCTTGGAGATATAAATAAGCAACTTAGGTTCAAGCTTGAATCAGATGGATTTAATCTTAAAGCTATTGAAAGTTTGTGGAGCTCTACTCATTCTGCTCCTGCTGTTGCTGGAGGAGGCAACTTTCCTTTTCAGCCTTCTGAAACCAATCCCATGGACTGCCAAACTGAACCTTTCTTGCAAATAGGGTACCAAAACTATGTTCAAGCTGAAGCATCCAGTGCTCCAAAGAACATGGTTGGTGGTGAGACTAGCTTTATCCAAGGATGGATGCTATGA 756 0.3995 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLSEFASSTSGIGKTLERYQRCSFTSQNDNVNEHETQNWYQEMSKLKAKYESLQKSQRQLLGEDLGPLNMKELQNLEKQLEGALAQARQRKTQIMIEQMEELKRKERHLGDINKQLRFKLESDGFNLKAIESLWSSTHSAPAVAGGGNFPFQPSETNPMDCQTEPFLQIGYQNYVQAEASSAPKNMVGGETSFIQGWML 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02064 251 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g02064 251 Coils Coil 122 145 - -
Mepo3g02064 251 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mepo3g02064 251 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo3g02064 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 FunFam MADS-box transcription factor 1 13 87 - -
Mepo3g02064 251 Coils Coil 95 115 - -
Mepo3g02064 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Mepo3g02064 251 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Mepo3g02064 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo3g02064 251 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02064 Mepo-Chr3 30055666 30061025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02064 1 251 MADS-box Gene Family AT2G45650 64.062 8.56e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo3g02064 K-box 3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02064 K09264 - tcc:18614251 361.688