Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g02057 ATGATGTCAGTCGAAATTATCGAGACCAATGAGCAAGATCAAATAACTCCTGTGCCAGTAGAAGTTACTACCAATGAAGAAATTACTGAAGAGGCAGCAGTGTGCAGGATATGTCTTGATGTATTCGATGAACGAAATATCTTTAAAATGGAATGCAGTTGCAAAGGTGACCAGAGGTTGGTGCATGAAGAATGTTTAATCAAATGGTTCAGCACAAAGCGAAACAAAAAATGTGATGTATGCTTGACAGAGGTTCAGAATTTACCGGCAAACTTGGTCCATGAGTGCCGCTCTGTACAACCAAGAAACATACGATTAAGTGCTTGGCAAAACTTTGTAGTGCTTGTCATGATCAGCACACTATGGTATTTTCACTTCATCGTAGATCTACTGTATCGTGATTTGAAGACTCGAGGAATCATTATAGCAGCAGCAGTTTCCTTTACATTGAGTCTCCTGGCATCTGTTTTTGCATTTTTCCTTGCAATCAGAGAGTATATGTGGCTATATGCTCTTCTTGAGTTTGGACTTGTGGATGTAACCTTCCTACTGTTTTATACTTTGTTGCATTTGGCGCCAATTTATTCCATACCACTTTCATCAGTTGTAGGTTTTGGAATCGCTATGGGAATCAACTATATGTATATCAAGCATGTGAATCGGAGACTTCAGGTCTCTACTAATGATATCCCAAGCCGCATGTATGGGAAAAGTTGGGGATATGTAAAGTACGTCCAGTCTTTGCCTGCTCTGATGATGTCCTCTTGTCCTAATTAA 777 0.3977 MMSVEIIETNEQDQITPVPVEVTTNEEITEEAAVCRICLDVFDERNIFKMECSCKGDQRLVHEECLIKWFSTKRNKKCDVCLTEVQNLPANLVHECRSVQPRNIRLSAWQNFVVLVMISTLWYFHFIVDLLYRDLKTRGIIIAAAVSFTLSLLASVFAFFLAIREYMWLYALLEFGLVDVTFLLFYTLLHLAPIYSIPLSSVVGFGIAMGINYMYIKHVNRRLQVSTNDIPSRMYGKSWGYVKYVQSLPALMMSSCPN 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g02057 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 91 IPR013083 -
Mepo3g02057 258 Pfam RING-variant domain 35 81 IPR011016 GO:0008270
Mepo3g02057 258 SMART ringv_2 34 82 IPR011016 GO:0008270
Mepo3g02057 258 CDD RING_CH-C4HC3_MARCH 35 81 - -
Mepo3g02057 258 ProSiteProfiles Zinc finger RING-CH-type profile. 27 88 IPR011016 GO:0008270
Mepo3g02057 258 ProSiteProfiles Zinc finger RING-type profile. 35 81 IPR001841 -
Mepo3g02057 258 PANTHER OS02G0165000 PROTEIN 10 228 - -
Mepo3g02057 258 SUPERFAMILY RING/U-box 31 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g02057 Mepo-Chr3 30004757 30008439 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g02057 35 128 C3H Transcription Factor Family AT5G05830 30.400 1.39e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g02057 - - mtr:11432594 421.394