Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01996 ATGGCTGCAAATTCTGAGAATATATTGTCCTTGTCATTGCTTTCTACTTCAGAAGTTCTTGGTGGCGCTGATTCTCCCGTGGTTGCAGTGTGTTCTCTTTGCCGCAAAGCCTTATCGCCTGATGATGAGATAACAGATCTTGCAGCCGGTGGTGTATGTGGTGATTGTAAATTTTTATTGCTCGAAGACTTTGGAAATCATACACTTGCACAAAGCTCTCATAGGAGGCTAAGAGGAAGATTGAGGCACGGTAGTTCTGAATCATTTGAGAACCTTGCATCTTTAGAGGAAGATCAACTTGTAGATGGTGACAACACTGCATGGTCATTGCAGTATGCTAGTGCAAATACAACTCCTACTGGGTCTAGAAGCTGGAGGCATGTTCTCTCGGATACCGAAAGTGATGGTTTTGATAATTGGCGTTCTCTTTATGGTGAAAATGAATCAAATTCAAGTTTTAGACCGTATAGGGTTCCCCACAGTGAGACTGATTCCTTTTCTTTCAGTGCTTATGGAGGTGAGTCCGATATCTCTATGGATAGACAGAGTTTTGTAGGTAATGAAACTTTTAATTTACCAGAAGGGGGAGATGAGTTTGATAGTGACACCGACATCGATCCAATGCATGCTGGCCTCGGTCAGTGGAACTCGGATGATACGGAAGACGAGGAGGAAGAGGAATTACCTGAGGTTGACGAAGCTGAAGCCGCTCGCCTTCAAATTCTTATAAACTCAAGTCCAAGTGAGAGCCAAAGTCGCATTAATTGGGAACAAAGGTTTAATGCTACTGAATCTGAGGGAATATTTAGCCGGATAATCAGGGAAACTTGGTTAGCTTTGGACGACGCTGATTTACCTCAAGGAGCTAACTTTGGAGATTTCCTTGATACCAGACGCTTCAATGATCTGCTTGACCATCTCGCTGAAAATGACAGCTCAAGACGAGGAGCACCTCCTGCTGCTGCATCGTTTGTAAACAGTCTACCTCATGTAGTCATTAGCAAGGAACATGAGAAGCATGATGAACTAGTTTGTGCCATCTGCAAGGATGTTTTGGCCCTCGGCACTGAAGTAAATCAGCTCCCTTGTTCTCACCTTTACCACTCTCATTGCATTTTACCGTGGTTGAAGACACGTAATTCATGCCCTCTTTGTCGTTACGAGCTTCCAACTGATGATAAGGATTACGAAGAGGGAAAACAGAACGTTGATGGTAGAAATGTGATCTATGATAGGCAACAATTGCATGTTATGGATGATAGTTTCTCTGATGTTTCTGATGGAGACGAAGCGGTTGAAGACGATGGTACCACTACTCATGATACTGTGAACTCTTCTGCAGTAAGTGGTGGCGGCGGAAGATGGTTGTTTCTTGCTGCAGCTCCAATTGTTAGTCTAGTAGGCATGGTTATTGTACTGTGGTTAGGTAGTAACTCTCAGATTGAAGAGACTAGACATTCGAGTACTCGCTATTTGTCTGCGCAAAATCAGCACCCTGTTCATGTTTCTGGTTCTCAAAACCAAAGGGAGAGTAGAAGCAGAAGATGGTGGTGTCCATTCTAA 1563 0.4363 MAANSENILSLSLLSTSEVLGGADSPVVAVCSLCRKALSPDDEITDLAAGGVCGDCKFLLLEDFGNHTLAQSSHRRLRGRLRHGSSESFENLASLEEDQLVDGDNTAWSLQYASANTTPTGSRSWRHVLSDTESDGFDNWRSLYGENESNSSFRPYRVPHSETDSFSFSAYGGESDISMDRQSFVGNETFNLPEGGDEFDSDTDIDPMHAGLGQWNSDDTEDEEEEELPEVDEAEAARLQILINSSPSESQSRINWEQRFNATESEGIFSRIIRETWLALDDADLPQGANFGDFLDTRRFNDLLDHLAENDSSRRGAPPAAASFVNSLPHVVISKEHEKHDELVCAICKDVLALGTEVNQLPCSHLYHSHCILPWLKTRNSCPLCRYELPTDDKDYEEGKQNVDGRNVIYDRQQLHVMDDSFSDVSDGDEAVEDDGTTTHDTVNSSAVSGGGGRWLFLAAAPIVSLVGMVIVLWLGSNSQIEETRHSSTRYLSAQNQHPVHVSGSQNQRESRSRRWWCPF 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01996 520 ProSiteProfiles Zinc finger RING-type profile. 345 386 IPR001841 -
Mepo3g01996 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 305 392 IPR013083 -
Mepo3g01996 520 Pfam Ring finger domain 345 386 IPR001841 -
Mepo3g01996 520 MobiDBLite consensus disorder prediction 194 231 - -
Mepo3g01996 520 MobiDBLite consensus disorder prediction 495 513 - -
Mepo3g01996 520 SUPERFAMILY RING/U-box 326 392 - -
Mepo3g01996 520 MobiDBLite consensus disorder prediction 495 515 - -
Mepo3g01996 520 MobiDBLite consensus disorder prediction 217 231 - -
Mepo3g01996 520 MobiDBLite consensus disorder prediction 426 445 - -
Mepo3g01996 520 FunFam E3 ubiquitin-protein ligase RING1-like 306 392 - -
Mepo3g01996 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 244 390 - -
Mepo3g01996 520 SMART ring_2 345 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01996 Mepo-Chr3 29212380 29215393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01996 29 520 C3H Transcription Factor Family AT5G01980 43.570 1.37e-110 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01996 - - psat:127127254 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01996 3 29212380 29215393 Mepo3g01996 3 29212380 29215393 ECH