LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo3g01951	ATGAGTTTCAGAGAGAGGAACATAGAAGTTGTTGAAGAGAAGGAATGTGAAAAGTCAGTGAGGTCAAATGGGTCATTAACAAATACTACACAGTTTACAATTGATGAGAATCTTCTGGTTGATCCTAAATTGCTCTTTATTGGCTCCAAAATTGGTGAAGGTGCTCATGGAAAAGTTTATCAAGGAAGATATGTAGATCAAATTGTTGCTATCAAAGTTCTGCAGCGTGGGACTACGTCTGAAGAAAGAGCTTCGCTTGAAAATCGTTTTGCACGGGAAGTTAATATGATGTCTCGTGTCCATCATGACAATCTTGTAAAGTTTATCGGAGCATGTAAGGATCCTCTGATGGTGATAGTTACAGAGCTATTACCTGGAATGTCACTGCGAAAATATTTAACGAGTATCCGTCCTAAACCATTAGACATTCACGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTGCATGATAACGGGATCATACACAGAGACCTGAAACCTGACAATCTGTTGCTTACAGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTTGCAAGAGAAGAATCGGTGACCGAAATGATGACTGCAGAAACAGGAACTTACCGATGGATGGCGCCAGAGTTGTACAGTACTGTAACATTGCGTCAAGGAGAGAAAAAGCACTATAACAACAAGGTTGATGTGTATAGCTTTGGGATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCTTTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCCTTCAAGCAAGAGAGGCCGAAAATTCCTGATGATATATCACCTGATCTTGCTTTTGTCATACAATCGTGTTGGGTTGAAGATCCGAACTTGAGACCTAGCTTTAGTCAGATAATCCGGATGCTCAATGAGTTTCTCTTCACACTCTCACCACTATCTCCTCCCTTACCAGAACCCGACAATGAACCTAAGGCGGCAACAACAAGTAATAATGGTGCCATTACTGAGTTTTCTGCTCGGAACAAAGGAAAGTTTGCTTTTCTTCGCCAGTTATTTTCTTCAAAAAGGATAAAAAACTAA	1092	0.4084	MSFRERNIEVVEEKECEKSVRSNGSLTNTTQFTIDENLLVDPKLLFIGSKIGEGAHGKVYQGRYVDQIVAIKVLQRGTTSEERASLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKPLDIHVAINFALDIARAMDWLHDNGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPKIPDDISPDLAFVIQSCWVEDPNLRPSFSQIIRMLNEFLFTLSPLSPPLPEPDNEPKAATTSNNGAITEFSARNKGKFAFLRQLFSSKRIKN	363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo3g01951	363	Pfam	Protein tyrosine and serine/threonine kinase	47	306	IPR001245	GO:0004672\|GO:0006468
	Mepo3g01951	363	SUPERFAMILY	Protein kinase-like (PK-like)	42	328	IPR011009	-
	Mepo3g01951	363	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	165	177	IPR008271	GO:0004672\|GO:0006468
	Mepo3g01951	363	CDD	STKc_MAP3K-like	51	306	-	-
	Mepo3g01951	363	FunFam	Kinase suppressor of Ras 1	34	124	-	-
	Mepo3g01951	363	Gene3D	Phosphorylase Kinase; domain 1	33	124	-	-
	Mepo3g01951	363	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	45	307	-	-
	Mepo3g01951	363	Gene3D	Transferase(Phosphotransferase) domain 1	128	315	-	-
	Mepo3g01951	363	PRINTS	Tyrosine kinase catalytic domain signature	277	299	IPR001245	GO:0004672\|GO:0006468
	Mepo3g01951	363	PRINTS	Tyrosine kinase catalytic domain signature	159	177	IPR001245	GO:0004672\|GO:0006468
	Mepo3g01951	363	PRINTS	Tyrosine kinase catalytic domain signature	233	255	IPR001245	GO:0004672\|GO:0006468
	Mepo3g01951	363	PRINTS	Tyrosine kinase catalytic domain signature	121	134	IPR001245	GO:0004672\|GO:0006468
	Mepo3g01951	363	ProSitePatterns	Protein kinases ATP-binding region signature.	51	72	IPR017441	GO:0005524
	Mepo3g01951	363	ProSiteProfiles	Protein kinase domain profile.	45	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Mepo3g01951	363	SMART	serkin_6	45	310	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo3g01951	Mepo-Chr3	28670921	28674290	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo3g01951	33	360	MAP Kinase Kinase Kinase	AT5G01850	75.354	0.0	519

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Mepo3g01951		PK_Tyr_Ser-Thr	1.5e-61	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mepo3g01951	-		-	cave:132162584	576.244