Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01926 ATGGAATGGCAGATCCTGCTAGTAATGGAGGCACTCATTGTTTTAAAGAAAGGATCTCAGTTAATAAAGTACTGTCGAAAAGCCAAGCCAAAAGTTCGCCCTTTCAGACTCTCCTTGGATGAAACAACACTAATTTGGATTTCTCATAAAAAGGAAAGGACTCTAAAACTATCTTCGGTTTCACGGATTATTCCTGGACAAAGAACTGTTGTCTTTAGAAGATATTTGCAACCTGAAAAGGATTATCTTTCATTTTCGCTTGTTTATAATAACGGAGAGCGGACACTTGATCTGATATGCAAAGACAAAGCTGAAGCCGAGGTATGGTTTGCAGGGCTTAAGGCATTAATATCCACTGGAAGGCATAATAGGCTTGCTGGAAGTGAATTATCATATGAGGGTGTTGATTTTATTCCAAATGGTCGCCCTTTCGGTGCAGCATTAGAGATTTCAACAAGCATTGCTCGTGGTAGGGTCTCTACTGATTCATTGCCTAGTGAGTCTTCATTGTGTTTTGCAAACCCAGATGTGGGGTTAGATCGTACAAATATGCAAGGAAGGACTAGTGTTGGAGATGGTTTTCGGATTAGTGTGTCAAGTACACCTAGCGTTTCAAGTTTAGGATCAGGACCTGATGACATTGAGTCATTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCTGATGCAGTTGCACCCGATGGAAATGGCACTCAGTTCTCTTCCACCACAGATGTATTGGTTCCTAAGCCCTTAGAGTCAAGTGTTGTTCTAGATGTTCACCAGATTGCGTCTGGCGTGCGTCATATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACATGGGGAGAGGAATCTGGTGGAAGACTAGGTCATGGAATCGATAAAGATTTCGGCCGACCTCAACTTGTTGAGTTTCTAGCAGTTACTAATGTGGAAAGTGTTGCGTGCGGAGAGAATCATACTTGTGCTGTATCTATATCAGATGAACTATTCTCATGGGGTGACGGTAAATATAATGTTGGACTTCTCGGACATGGCACCGATGTTAGCCATTGGATACCGAAGAGGATTAATGGTCCTCTGGAAGGACTTCAAGTTATATCGATTGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTCACCTTTGGTGATGGAACATTTGGTGTATTAGGTCATGGAAATCGAGAGAGTGTGGCATATCCAAAAGAGGTACAATTATTAAGTGGATTGAAGACTATTACAGTTGCATGTGGAGTATGGCATACTGCAGCAATTGTAGAGGTTACTTTTCAATCAGGTTCAAATGTTTCGTCACGAAAGCTCTTCACTTGGGGAGATGGAGACAAATATCGATTAGGACATGGAAACAAGGAAACATACCTTCAACCTACCTGTGTATCAACACTCATCGAATATAATTTCCACCAGATTGCATGTGGACACACTACGACTATCGCTCTCACTACTTCTGGACATCTATTTACTATGGGAGGCACTGAATTTGGTCAACTAGGAAATTCTTTATCTGATGGAAAAATACCTATACTAGTACAAGACGCATTGGTGGGGGAATTCGTTGAGGAAATTTCATGTGGAGCTCATCATGTTGCTGCTTTGACATCAAGAAGTGAATTATATACTTGGGGTAAAGGTGCAAATGGAAGATTGGGGCATGGAGATATAGATGATAGAAAATCACCAACATTGGTGGAAGCCTTGAAAGAAAGGCATGTCAAAAACATTTCTTGCGGCTCAAGTTTCACTTCTTGCATATGCATTCATAAGTGGGTATCTGGTGTCGACCAATCCTCTTGCACCGGTTGCAGACAACCATTCGGTTTTACTAGAAAAAGACATAATTGTTATAATTGCGGATTAGTACATTGTCATGGTTGTAGTTCAAGAAAAGTTATGAAAGCAGCATTGGCTCCGACACCAGGAAAGCCTCATCGCGTATGCGATTCTTGCTACACTAAGCTTAAAGCGGTTGAGGCAAATGCGGCTTCGAATTTTAACAGAAAAGTTACTATTACACAACCTCGCAGTTCTATTGATGGAAGGGATAGATATGGCCAAGGAGAAACAGTAAGGTCTACAAAAATTCTTTTTCCTCCTTTCTCAGAACCACTAAAATATCTCGAAATGAGGACTAATAAGCTTGGGAATTCTTCCATGCTACCAACTTCTCAAATTCCATCAATTGCACAAATGAAAGACATATCATTTCCAAGTTCAACTAGCTCGATTCAAAATGGTTTGAAGTATCCTCTAGCTCCAACTCCACCTCTCAATGCGAGATCAGTATCCCCATATGCAAGAAGACCAAGCCCGCCACGTTCTAGCAGTCCGGGATTTTCAAGAAGTATTATTGATAGTATGAAGAAGACAAATGAGCTTTTGAACCAACAAGTCTCAAAATTGCAGAACCAAAATAAAAGTTTGAAGCAGAAAAGTACCATGGAAATTCAGAAACTACATAAAAACATTAAGGATGCCACCTCATTGGCTGCAGAAGAATCTTCTAAACATAGAGCAACCAAAGAGTATTTTGGGTCCATGATAGCTCAGTTGAAGGAAATGGCTGAGCAATTGCCACCAGAAGTTTTAGAGGGTGAAAAATTTAGAAACATGGTTATTCAGGCTGAGAATTTTCTAGAGGAAAATCCAAAATCTGAAACATGTTCTGTAGCATCAAACGTAGAATCTGAGCAACAAAGCGAACCTGTTTCAAACAATGGTAAACTTAAAGAACAAAGAATAGAAGAAAATAATAATGAAGCTGCAGAAGTTAATCCATCTCAGGATGTAGGAAATGTCTTTCAAGAAAACAATGGATCGTCTTCGTCTAATACTGAAGCAACAGCGGCATCACAAAGCTCTGAAAATGATTTAAGAACATTAAACCCTTCAAGATCAGTGAGAGAAGGAAACACACAAATCGTCGAACAATTTGAACCTAATAGTGGTGTTTATGTTACACTAATAGTAAGGCCGGATGGTAAAAGATTTTTCAAAAGTGTTAAATTCAGTAAACGAAAGTTTCGTGAACATCAAGCAGAAGAATGGTGGACCTTAAACAAAGATAGGGTGCATGCGAGATATAGTCCACAAGCGACAAATCCTGAAAATGTAGCGTCATCTAGCAGTAACCCACCACCTGCAAATCAAGATGTAGTATCATCTAGCAGTAACCCGCCGCCTGCAGAAGAAAACAATGAGGCAACACCACCTTCCTAA 3258 0.4018 MEWQILLVMEALIVLKKGSQLIKYCRKAKPKVRPFRLSLDETTLIWISHKKERTLKLSSVSRIIPGQRTVVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKALISTGRHNRLAGSELSYEGVDFIPNGRPFGAALEISTSIARGRVSTDSLPSESSLCFANPDVGLDRTNMQGRTSVGDGFRISVSSTPSVSSLGSGPDDIESLGDVYIWGEVWADAVAPDGNGTQFSSTTDVLVPKPLESSVVLDVHQIASGVRHMALVTRQGEVFTWGEESGGRLGHGIDKDFGRPQLVEFLAVTNVESVACGENHTCAVSISDELFSWGDGKYNVGLLGHGTDVSHWIPKRINGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVAYPKEVQLLSGLKTITVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTTTIALTTSGHLFTMGGTEFGQLGNSLSDGKIPILVQDALVGEFVEEISCGAHHVAALTSRSELYTWGKGANGRLGHGDIDDRKSPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSSCTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYTKLKAVEANAASNFNRKVTITQPRSSIDGRDRYGQGETVRSTKILFPPFSEPLKYLEMRTNKLGNSSMLPTSQIPSIAQMKDISFPSSTSSIQNGLKYPLAPTPPLNARSVSPYARRPSPPRSSSPGFSRSIIDSMKKTNELLNQQVSKLQNQNKSLKQKSTMEIQKLHKNIKDATSLAAEESSKHRATKEYFGSMIAQLKEMAEQLPPEVLEGEKFRNMVIQAENFLEENPKSETCSVASNVESEQQSEPVSNNGKLKEQRIEENNNEAAEVNPSQDVGNVFQENNGSSSSNTEATAASQSSENDLRTLNPSRSVREGNTQIVEQFEPNSGVYVTLIVRPDGKRFFKSVKFSKRKFREHQAEEWWTLNKDRVHARYSPQATNPENVASSSSNPPPANQDVVSSSSNPPPAEENNEATPPS 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 329 383 IPR000408 -
Mepo3g01926 1085 CDD FYVE_like_SF 611 664 - -
Mepo3g01926 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 616 674 IPR013083 -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 895 920 - -
Mepo3g01926 1085 SUPERFAMILY PH domain-like 7 117 - -
Mepo3g01926 1085 Pfam Transcription factor BRX N-terminal domain 845 879 IPR027988 -
Mepo3g01926 1085 SUPERFAMILY FYVE/PHD zinc finger 602 671 IPR011011 -
Mepo3g01926 1085 ProSiteProfiles BRX domain profile. 985 1042 IPR013591 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 545 566 IPR000408 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 195 211 IPR000408 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 386 400 IPR000408 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 487 505 IPR000408 -
Mepo3g01926 1085 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Mepo3g01926 1085 SMART fyve_4 600 669 IPR000306 GO:0046872
Mepo3g01926 1085 Gene3D - 6 124 IPR011993 -
Mepo3g01926 1085 ProSiteProfiles PH domain profile. 1 118 IPR001849 -
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 497 IPR000408 -
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 932 981 - -
Mepo3g01926 1085 Coils Coil 797 824 - -
Mepo3g01926 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 422 432 IPR000408 -
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 277 328 IPR000408 -
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 435 IPR000408 -
Mepo3g01926 1085 Gene3D - 443 615 IPR009091 -
Mepo3g01926 1085 Gene3D - 202 442 IPR009091 -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 895 981 - -
Mepo3g01926 1085 SUPERFAMILY RCC1/BLIP-II 217 603 IPR009091 -
Mepo3g01926 1085 Pfam Transcription factor regulating root and shoot growth via Pin3 986 1041 IPR013591 -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 1043 1076 - -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 760 795 - -
Mepo3g01926 1085 MobiDBLite consensus disorder prediction 1032 1085 - -
Mepo3g01926 1085 CDD PH_PLC_plant-like 8 118 - -
Mepo3g01926 1085 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 606 668 IPR017455 -
Mepo3g01926 1085 Pfam Pleckstrin homology domain 13 117 IPR001849 -
Mepo3g01926 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 51 855 - -
Mepo3g01926 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 497 546 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 383 432 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 551 598 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 329 379 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 448 494 IPR000408 -
Mepo3g01926 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 277 325 IPR000408 -
Mepo3g01926 1085 Pfam FYVE zinc finger 602 668 IPR000306 GO:0046872
Mepo3g01926 1085 FunFam PH, RCC1 and FYVE domains-containing protein 1 189 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01926 Mepo-Chr3 28375208 28379805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01926 865 1041 Major Intrinsic Protein MIP AT1G31880 23.913 8.18e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01926 - - gmx:100779684 1471.06