Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01863 ATGCCCGAGAGAATTTCCATTGGAAATGATGAGGATAAAAACCTCAAACGCAAAATGGTGGAGGAGCCAAAAATAGAGTCGAAATCAAAGAAGGAGTCAAAGACAATGACACCAACCTCTGAATCTGATGTTGAGGATTTACTGACCCTAAGACTTGGCACTCACACCAAATCCACTTCCAAACCCTTGGAGAATGGTGGACATTCAAGTTCATTTCAAAACACTACTCATGAAGCTTTACCTGAGCAGAAAGTGGTAGAGTTCTCTTGTAATTATTGTGACAAGAAATTCTCCACTTCTCAAGCTCTTGGAGGTCACCAAAATGCTCATAAGCGTGAACGTGTCTTGAAAAAAATGGAAGATAAAAGGAGAGAGGAAGAGATGGATTCAACCCTATGGTTTTCAAGCTCTATTCACTATCAAGGCCATTCATATTTCCGTAGTGCTAACTTGCACAACCCAATTGGCGTCCATGTGACCAATGCCTTTCCTTCTTGGCTCGGTTCACCTTATGGAGGCTATGGAGGGGTGTATATGCCAAATACACCCCTTGCAACTCGGTATGTGATGCAAATGCCAAATTCATCCCAAGCAACACCACAATTTGGGATGACTAATTTTTGGGGTGGAGGTCAAAATGCTGCATTGCCAATTCCACAAAGGTCAAACACTTTGGGTTTTGGACTTTTTCCTCAGAGAAATTTCATTGATCAACTTCGTTCTCACACTCTTCCATTATTATCTCGTGATCCTAATAGAGAAGGCATAATTCAGGCAAATCCCAATGTGTCCTCATCATCAACTCAATCAACCTAG 816 0.4167 MPERISIGNDEDKNLKRKMVEEPKIESKSKKESKTMTPTSESDVEDLLTLRLGTHTKSTSKPLENGGHSSSFQNTTHEALPEQKVVEFSCNYCDKKFSTSQALGGHQNAHKRERVLKKMEDKRREEEMDSTLWFSSSIHYQGHSYFRSANLHNPIGVHVTNAFPSWLGSPYGGYGGVYMPNTPLATRYVMQMPNSSQATPQFGMTNFWGGGQNAALPIPQRSNTLGFGLFPQRNFIDQLRSHTLPLLSRDPNREGIIQANPNVSSSSTQST 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01863 271 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Mepo3g01863 271 Gene3D Classic Zinc Finger 67 141 - -
Mepo3g01863 271 SUPERFAMILY beta-beta-alpha zinc fingers 88 116 IPR036236 -
Mepo3g01863 271 MobiDBLite consensus disorder prediction 250 271 - -
Mepo3g01863 271 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Mepo3g01863 271 MobiDBLite consensus disorder prediction 255 271 - -
Mepo3g01863 271 MobiDBLite consensus disorder prediction 1 39 - -
Mepo3g01863 271 Pfam C2H2-type zinc finger 88 112 - -
Mepo3g01863 271 MobiDBLite consensus disorder prediction 1 44 - -
Mepo3g01863 271 MobiDBLite consensus disorder prediction 56 76 - -
Mepo3g01863 271 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 26 154 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01863 Mepo-Chr3 27305598 27306413 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01863 63 185 C2H2 Transcription Factor Family AT5G10970 38.931 2.92e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g01863 zf-C2H2_6 8.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01863 - - tpra:123892015 272.322