Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01854 ATGGAGTGTAACACCTCTTATTCTTATGGGTCATGTTCAAAGAGAAAAGAGAAAAAGGGTGTGAAAAAATCCAAAGGAACATCAGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGACATAGAATCAGTGATAGGTTCAAGATTCTTCAGAGTATGATCCCAGGAGGGAGTAAATTGGACACTGTTTCAATGTTGGAGGAAGCTATTCATTATGTTAAGTTTCTTAAGAAACAGATTTGGCTTCATGAAACATTGATTAACTTTGTTGATGATATTGGTGAGTCACACATGTTGCTTCCTCAAGATTATTCTTCAAATGATAAAAATATTGCTTCAGGTTCATTTGAGTCTATGCAGAATTTGCCACAGTTACCACTAGAGCAGTTCTGTTTTCAAGGAGATGAAGATATCAAAACTATCTTTGATGCCACTATGAAATATTAA 459 0.3508 MECNTSYSYGSCSKRKEKKGVKKSKGTSVKLSTDPQSVAARERRHRISDRFKILQSMIPGGSKLDTVSMLEEAIHYVKFLKKQIWLHETLINFVDDIGESHMLLPQDYSSNDKNIASGSFESMQNLPQLPLEQFCFQGDEDIKTIFDATMKY 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01854 152 MobiDBLite consensus disorder prediction 1 42 - -
Mepo3g01854 152 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 36 91 IPR036638 GO:0046983
Mepo3g01854 152 SMART finulus 37 86 IPR011598 GO:0046983
Mepo3g01854 152 Pfam Helix-loop-helix DNA-binding domain 41 80 IPR011598 GO:0046983
Mepo3g01854 152 FunFam Transcription factor LAX PANICLE 34 96 - -
Mepo3g01854 152 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 19 129 IPR045843 GO:0003700|GO:0006355
Mepo3g01854 152 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 31 80 IPR011598 GO:0046983
Mepo3g01854 152 CDD bHLH_AtIND_like 32 91 - -
Mepo3g01854 152 Gene3D - 34 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01854 Mepo-Chr3 27185314 27185772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01854 21 129 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.119 4.87e-23 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo3g01854 HLH 9.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01854 - - gmx:113002129 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01854 3 27185314 27185772 Mepo3g01854 3 27185314 27185772 ECH