Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01812 ATGGAAATGGCTTCTAGCCCTCGTACCGTTGAAGAGATCTTCAAAGATTACAGCGCTCGTAGAATCGCCGTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGTCTCTGTGATCCAGATAAGGATAATTTGTGCCTCTATGGTCATAATAATGAAAGCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCGCCGGAACTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTCGAGATGGCATGAACCGTAGGGATTGGCTTTCTCTTGTTGCTGTGCACAGTGATTCATGGTTGCTTTCTGTGGCGTTCTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAACGAACTTCCCACCGTTTTCGAAATTGTGACCGACAGGAAACCAATTAAGGACAACAAGCCAGCAGCGGACAGTGGAAGCAAATCCCGAGGAAGCACCAAGAGATCCAGTGACGGGCAAGTCAAAAGCAACCCAAAGTTTCCTGTGGATGATGGTTATGAGGAGGAGGAGGAAGACGAGCACAGTGAAACACTTTGCGGGAGCTGCGGCGGTAATTACAACGCCGACGAGTTTTGGATTGGTTGTGATATATGTGAGAGGTGGTACCATGGGAAATGTGTGAAGATCACTCCTGCGAAGGCCGAGAGCATAAAGCAATACAAGTGCCCTCAATGCAGCATCAGGCGGAACAGACCCTAG 729 0.4787 MEMASSPRTVEEIFKDYSARRIAVVRALTQDVDEFYGLCDPDKDNLCLYGHNNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINELPTVFEIVTDRKPIKDNKPAADSGSKSRGSTKRSSDGQVKSNPKFPVDDGYEEEEEDEHSETLCGSCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPQCSIRRNRP 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01812 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 236 IPR013083 -
Mepo3g01812 242 ProSiteProfiles Zinc finger PHD-type profile. 186 238 IPR019787 -
Mepo3g01812 242 FunFam PHD finger alfin-like protein 181 237 - -
Mepo3g01812 242 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Mepo3g01812 242 MobiDBLite consensus disorder prediction 140 177 - -
Mepo3g01812 242 PANTHER CPG BINDING PROTEIN 6 241 IPR045104 GO:0006355|GO:0042393
Mepo3g01812 242 Pfam PHD-finger 189 236 IPR019787 -
Mepo3g01812 242 SUPERFAMILY FYVE/PHD zinc finger 178 240 IPR011011 -
Mepo3g01812 242 CDD PHD_AL_plant 188 238 IPR044104 -
Mepo3g01812 242 MobiDBLite consensus disorder prediction 148 166 - -
Mepo3g01812 242 ProSitePatterns Zinc finger PHD-type signature. 189 235 IPR019786 -
Mepo3g01812 242 SMART PHD_3 188 236 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01812 Mepo-Chr3 26662710 26665895 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01812 4 241 Alfin-like Transcription Factor Family AT5G05610 73.950 2.34e-117 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo3g01812 Alfin 1.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01812 K26274 - gmx:100793126 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01812 3 26662710 26665895 Mepo2g00451 2 5347219 5351117 PCT