Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01800 ATGGGTTTTGTTCTCAAAAGAAGGAAGAAAGAAATAGAGATCATGCGAAAGTCTTTCAAGGATTCTCTCAAAGCTCTTGAAGCTGATATTCATTTTGCCAATACACTAGCTTCGGATTATCCAAGTGATCAGGATGGTGCCTACCTTCAAATGAGATTGTCCTACAGCCCAGCTGCACACTTCTTCCTTTTTTTGGTTCAGTGGACCGACTGTCACCTTGCCGGAGCCTTAGGATTGCTTAAAATTTTCATATACAAGGCACATAAGGATGGAAAGACAACCATGTCTATTCATGAAAGAAAAGCAAGTTTGAAGGAGTTCTATGGTGTGGTGTTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGATGTCGAGGATAGGAAACAAAAACATCTGTGTGCTACTAAGTACAAGCCTATAGAATTGGTAGACAAAGGAAAGAGCTCTGAAATTGACGTAGAGAAAGAAGAAGAAGAGTGTGATATTTGCATGGAGATTACCAGCATAGTTGTATTGCCCAATTGCAATCATTCAATGTGTATCAAATGCTACCGAGACTGGCATGCAAGATCCGAATCCTGCCCTTTCTGTCGGGACAGTCTAAAACGAGTAAACTCAGGTGACCTATGGATGTACTTGAGCAGCAGTGAGATAGATGATCTTGCTTCAATCAACAAGGAGAATTCGAAAAGACTATTTATGTACATAGAAAAGTTACCTCTTGTTGCTAGACCCTATATTCACATGGTATCATCACAACTTGTGGTTGCCTCTTAG 780 0.4038 MGFVLKRRKKEIEIMRKSFKDSLKALEADIHFANTLASDYPSDQDGAYLQMRLSYSPAAHFFLFLVQWTDCHLAGALGLLKIFIYKAHKDGKTTMSIHERKASLKEFYGVVFPSLLQLHRGITDVEDRKQKHLCATKYKPIELVDKGKSSEIDVEKEEEECDICMEITSIVVLPNCNHSMCIKCYRDWHARSESCPFCRDSLKRVNSGDLWMYLSSSEIDDLASINKENSKRLFMYIEKLPLVARPYIHMVSSQLVVAS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01800 259 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Mepo3g01800 259 FunFam RING/U-box superfamily protein 142 208 - -
Mepo3g01800 259 PANTHER RING FINGER PROTEIN 41, 151 17 243 - -
Mepo3g01800 259 Coils Coil 9 29 - -
Mepo3g01800 259 SMART ring_2 161 198 IPR001841 -
Mepo3g01800 259 SUPERFAMILY RING/U-box 155 204 - -
Mepo3g01800 259 Pfam Zinc finger, C3HC4 type (RING finger) 157 204 - -
Mepo3g01800 259 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 207 IPR013083 -
Mepo3g01800 259 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01800 Mepo-Chr3 26454779 26458447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01800 104 203 C3H Transcription Factor Family AT5G01960 30.769 3.66e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01800 K25840 - gmx:100814293 385.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01800 3 26454779 26458447 Mepo3g01800 3 26454779 26458447 ECH