Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01768 ATGATGTTATCTAGAACAATGAATAGAGGAGTTGAAGTTCTATCACCAGCTTCCTATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAATGGTTCAAAATGGACTTCAGAAGAGAATAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCAGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTAGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTGTGTGTTATTGAAGCTGGTCTGATACCAGTTCCTGGTTATACAACTAGTTCTTTCACATTGGATTGGGATAACAGTGAAGGATATGATGAGTTCAAGCAGTTTTGTAGTGTTGGTGGGAAAAGAAATGGTTCGACTCGGCCGTCGGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACTGAAGAGGAGCATAGGCAATTTTTGTTGGGTCTGAAGAAGTATGGCAAGGGAGACTGGAGAAACATCTCTAGGAATTTTGTGACCACGAGGACACCAACTCAAGTCGCAAGTCATGCTCAGAAGTATTTCATTAGGCAGCTTTCAGGAGGGAAGGATAAGAGGAGATCAAGTATCCATGATATCACAGTGGTCAATCTCCAAGACACAAAATTGCCTTCACCAGACAGTAACAGTCCTTCTTCTCCGGAACATTTGGTGAAGGTTGCAAATCAACCGCAAAATCATAATTTGTCCGGCTTGGTTAAGCAAGAATTTGACTGGAAATCACCAGACGAGGGCATGCCATTTGTTTTTAATTCAGCTAAAGGAAACATGTTTGTGGCACCGTCGTGCGGGATTTCTTCACACGAATCGAAATCGCCGGGGCGTAATGTGCTCCGAAGCACTCATCATGGATACCAGTTTTCACCTTTTGATACTATATTGCAAATGCAATCTATGCAGCATCAATGA 942 0.4161 MMLSRTMNRGVEVLSPASYIQNSNWLFQENNGSKWTSEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWDNSEGYDEFKQFCSVGGKRNGSTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGGKDKRRSSIHDITVVNLQDTKLPSPDSNSPSSPEHLVKVANQPQNHNLSGLVKQEFDWKSPDEGMPFVFNSAKGNMFVAPSCGISSHESKSPGRNVLRSTHHGYQFSPFDTILQMQSMQHQ 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01768 313 CDD SANT 141 186 IPR001005 -
Mepo3g01768 313 ProSiteProfiles Myb-like domain profile. 27 81 IPR001005 -
Mepo3g01768 313 CDD SANT 34 80 IPR001005 -
Mepo3g01768 313 SUPERFAMILY Homeodomain-like 135 189 IPR009057 -
Mepo3g01768 313 Pfam Myb-like DNA-binding domain 33 79 IPR001005 -
Mepo3g01768 313 Pfam Myb-like DNA-binding domain 141 186 IPR001005 -
Mepo3g01768 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 134 190 IPR017930 -
Mepo3g01768 313 Gene3D - 140 190 - -
Mepo3g01768 313 FunFam Transcription factor SRM1 27 94 - -
Mepo3g01768 313 ProSiteProfiles SANT domain profile. 142 190 IPR017884 -
Mepo3g01768 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 137 189 IPR006447 GO:0003677
Mepo3g01768 313 ProSiteProfiles Myb-like domain profile. 134 186 IPR001005 -
Mepo3g01768 313 Gene3D - 27 94 - -
Mepo3g01768 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 28 270 IPR043363 -
Mepo3g01768 313 MobiDBLite consensus disorder prediction 123 142 - -
Mepo3g01768 313 SUPERFAMILY Homeodomain-like 33 88 IPR009057 -
Mepo3g01768 313 FunFam transcription factor MYB1R1 140 191 - -
Mepo3g01768 313 SMART sant 138 188 IPR001005 -
Mepo3g01768 313 SMART sant 31 83 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01768 Mepo-Chr3 26037011 26039836 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo3g01768 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01768 - - var:108329798 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01768 3 26037011 26039836 Mepo3g01768 3 26037011 26039836 ECH
Mepo3g01768 3 26037011 26039836 Mepo7g02236 7 33037085 33039482 ECH