Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g01696 ATGTCAAATTTACAAATGGCCCATGTTGATTTAGAGCAAGAAAATCATCTTCATCGCCATCATCATCATCATGGAAGTGATGTGAGTGGTGAAGGAAGTGTATGTTTCTCTGATGCAGATGATGGTGGTTCAAACTATTCTCATTTCTATTCAACAAATGGTGGTTCAAGCTATGATGATTACACTTTTGCTTGTGTTTCTGATCCTGAACTTGGTTGTGTTCATGATTCTAGAAGAGTTTCTTCTGTTACTGATTGTTCTGTTGAGGTTGAAATTAGAATTGAGAGGGTTCCTGAGAATAAGGTGCATTTGGCTAAAGTGGAGAAAGATTGTAGGATTTGTCATATGGGTTTGGAGAGTGAAAGCCATGAATCTGGTCCTCCAATTGAATTGGGTTGTTCTTGTAAAGAGGATTTAGCTGCTGCTCATAAGAATTGTGCTGAGGCTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCGGTTGCACGGAACGTTTACAGTCCAACTGAGGATTTAACCGAGCATGTTAGCGAGAATAACAATGCGACCGCATCATCCACACTCTCAACAGCCGCTCCTACAGCAGAAACTCAAAGATTTTGGCATGGCCATCGCTTCTTGAATTTTCTGTTGGCTTGTATGGTTTTTGCATTTGTCATATCATGGCTTTTCCACTTTAATGTGCCATCATCTTAG 708 0.3997 MSNLQMAHVDLEQENHLHRHHHHHGSDVSGEGSVCFSDADDGGSNYSHFYSTNGGSSYDDYTFACVSDPELGCVHDSRRVSSVTDCSVEVEIRIERVPENKVHLAKVEKDCRICHMGLESESHESGPPIELGCSCKEDLAAAHKNCAEAWFKIKGNRTCEICHSVARNVYSPTEDLTEHVSENNNATASSTLSTAAPTAETQRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g01696 235 SUPERFAMILY RING/U-box 108 166 - -
Mepo3g01696 235 Pfam RING-variant domain 111 162 IPR011016 GO:0008270
Mepo3g01696 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 172 IPR013083 -
Mepo3g01696 235 ProSiteProfiles Zinc finger RING-CH-type profile. 103 169 IPR011016 GO:0008270
Mepo3g01696 235 SMART ringv_2 110 163 IPR011016 GO:0008270
Mepo3g01696 235 CDD RING_CH-C4HC3_MARCH 111 163 - -
Mepo3g01696 235 PANTHER ZINC FINGER, RING-CH-TYPE 18 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g01696 Mepo-Chr3 25250623 25253775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g01696 74 235 C3H Transcription Factor Family AT5G05830 58.896 4.03e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo3g01696 - - gmx:100808666 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g01696 3 25250623 25253775 Mepo3g01696 3 25250623 25253775 ECH
Mepo3g01696 3 25250623 25253775 Mepo7g02218 7 32904584 32907719 ECH